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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGCCTAATCAGCAGACTGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaataaaaattatattctttgttcttcgctgtgttcggtcgctgagaagaccgaggaaaaacgaagacttcgtttttttcttttttccttttc...

Basic information

species Vitis vinifera
transcript Vv04s0008g05020.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695697|gb|EE074010.1|EE074010
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110724001|gb|EE099447.1|EE099447
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110395970|gb|EC961644.1|EC961644
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110723317|gb|EE100491.1|EE100491
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110370561|gb|EC930011.1|EC930011
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110703623|gb|EE080641.1|EE080641
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110724830|gb|EE101011.1|EE101011
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110718100|gb|EE094549.1|EE094549
EST:     GGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: GGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|37184373|gb|CF603727.1|CF603727
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|29783439|gb|CB349598.2|CB349598
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110722837|gb|EE099459.1|EE099459
EST:     CGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: CGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110415830|gb|EC981768.1|EC981768
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110697462|gb|EE074469.1|EE074469
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
EST: gi|110399139|gb|EC965632.1|EC965632
EST:     TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAG                         GAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT
genomic: TGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaa ... gccaatgcagGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTTGCCTAATCAGCAGACTGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGgtgatcacaataaaaattatattctttgttcttcgctgtgttcggtcgctgagaagaccgaggaaaaacgaagacttcgtttttttcttttttccttttc

- - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa