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GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgttttccgatccaaagctctccctatgatattggaagaaattgaagaaaaaaaggatatctgttgaaatatgaataaccagtggtgtgaaaatct...
species | Vitis vinifera |
transcript | Vv04s0008g03260.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG GTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTTEST: gi|351013864|gb|FQ434016.1|FQ434016
genomic: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgtttt ... tttgtgacagGTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTT
EST: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG GTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTTEST: gi|351031315|gb|FQ445340.1|FQ445340
genomic: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgtttt ... tttgtgacagGTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTT
EST: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG GTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTTEST: gi|351045014|gb|FQ449268.1|FQ449268
genomic: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgtttt ... tttgtgacagGTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTT
EST: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG GTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTT
genomic: GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgtttt ... tttgtgacagGTCGTGAAAGAAGAAACATGGGAAGGCTTCATTTCAGATACTTTATTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAGgtaccgttttccgatccaaagctctccctatgatattggaagaaattgaagaaaaaaaggatatctgttgaaatatgaataaccagtggtgtgaaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaaa