1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAAGTGAGGAAACTATATGGCATTAGCAAGGCTGAAAATCTACCAATTAATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGgtatatttacaattattctattttttttttttagtgagactattttccgtctttgtttttatagagtttcaatcagcgatgaacatcgttctctttatatccactgatttgcattttttcttcttaccctcattttgtatattaatttgatcatttgggtttgcag
species | Vitis vinifera |
transcript | Vv04s0008g03010.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAG GCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGGEST: gi|110703089|gb|EE079631.1|EE079631
genomic: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGgtatatttac ... gggtttgcagGCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGG
EST: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAG GCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGGEST: gi|33408243|gb|CF213870.1|CF213870
genomic: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGgtatatttac ... gggtttgcagGCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGG
EST: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAG GCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGG
genomic: ATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGgtatatttac ... gggtttgcagGCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGTGAGGAAACTATATGGCATTAGCAAGGCTGAAAATCTACCAATTAATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGgtatatttacaattattctattttttttttttagtgagactattttccgtctttgtttttatagagtttcaatcagcgatgaacatcgttctctttatatccactgatttgcattttttcttcttaccctcattttgtatattaatttgatcatttgggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT