Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACTTGAAGAGTTGCATTGCTGGTGCTAGGCAGCAGCTGAACCATGTAGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagcattgctgtttagcctttacaaaaagatttcatcttgatttgcttttattgttttgtttaaaggttttatttatcttttgattag

Basic information

species Vitis vinifera
transcript Vv04s0008g02290.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713662|gb|EE089777.1|EE089777
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|22009632|gb|BQ794666.1|BQ794666
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACC-TTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|161713609|gb|FC063419.1|FC063419
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110359196|gb|EC920296.1|EC920296
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110720159|gb|EE095835.1|EE095835
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110719678|gb|EE095026.1|EE095026
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110723887|gb|EE099235.1|EE099235
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|351027748|gb|FQ446915.1|FQ446915
EST:     AGAGAATCTGCCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110712068|gb|EE089269.1|EE089269
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|22009633|gb|BQ794667.1|BQ794667
EST:     AGAGAATCT-TCTGAAGC-TCGGAAACAACAGAAAATA-GGCTAATAGAG                         GATACC-TTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|33402318|gb|CF207945.1|CF207945
EST:     CAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: CAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110713425|gb|EE089336.1|EE089336
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110720612|gb|EE096687.1|EE096687
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110710869|gb|EE087414.1|EE087414
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|349830496|gb|FQ416794.1|FQ416794
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110409640|gb|EC975307.1|EC975307
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|33402240|gb|CF207867.1|CF207867
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|349823913|gb|FQ415324.1|FQ415324
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110713275|gb|EE089053.1|EE089053
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110375238|gb|EC940205.1|EC940205
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|30302702|gb|CB979496.1|CB979496
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110699234|gb|EE076052.1|EE076052
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|294966281|gb|GW837532.1|GW837532
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|349825321|gb|FQ418053.1|FQ418053
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110718678|gb|EE095783.1|EE095783
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|22009328|gb|BQ794362.1|BQ794362
EST:     GAG-ATTTGTTTGAAGCTTCGGAAACAACAG-AAATAGGGGCT-ATAGA-                         GATACCTTTTCGAGGGACATCTCACTGTGGACT-CTGAGCCTCCAAGACCC
genomic: GAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATA-GGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGA-TCCTGAGCCTCCAAGACCC
EST: gi|22009660|gb|BQ794694.1|BQ794694
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|349823912|gb|FQ415323.1|FQ415323
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|110398241|gb|EC964460.1|EC964460
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|352794437|gb|FQ481668.1|FQ481668
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|351037479|gb|FQ460678.1|FQ460678
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|352763367|gb|FQ471679.1|FQ471679
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: gi|351038146|gb|FQ465263.1|FQ465263
EST:     AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG                         GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAACTTGAAGAGTTGCATTGCTGGTGCTAGGCAGCAGCTGAACCATGTAGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagcattgctgtttagcctttacaaaaagatttcatcttgatttgcttttattgttttgtttaaaggttttatttatcttttgattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC