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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatggtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcag

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 3
TAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg---gtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttg----cttgatcccattgg--tcaaatcaacgtatcag----------------------------------------------------------------------------------
| || |||||||| || |||||||| |||||  | |||||||||||||| ||||| || |||||||||||||| || || || |||||||| |||||||||||||| |||    |||  ||   | || |||||||  | |     ||     | ||| |    | || |    ||||  || | |    ||    |                                                                                  
TTGAGCTTATTGCTTCTGAGAATTTTACATCTAGAGCAGTGATGGAAGCAGTTGGGTCGTGCCTCACAAACAAGTACTCAGAAGGATTGCCGGGTAAAAGgtaaaa-atgtctctttgatttaagaaaatgtttttcatttccatatcttcaagatttagaaaacatgtttgttttggtatccagtttttgttcttggaaaatgagaatttagaaatgtgttgatttattcattttcaaatataattaaaatttcacaaaacctcattgtacatgtaag

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ14551 (Selaginella moellendorffii), 5'ss of exon 1
TAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatggtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcag
|||| || |||||||| |||||||| || ||||| || |||||||||||||||||||| ||| | |||||||| || || || ||  | ||||| |||||||    | | | |  |||        | ||||| | |||| | |    |   || ||  |                            
TAGAGCTCATTGCCTCGGAGAATTTTACGTCCCGAGCTGTGATGGAAGCTGTTGGTTCGTGCTTGACAAACAAGTACTCGGAAGGGCTTCCTGGGAAAAGgttttgcctcgctctttt--------tttttttttgcttgaagtttaacgagttgtggatag--------------------------

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ26254 (Selaginella moellendorffii), 5'ss of exon 1
TAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatggtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcag
| || || |||||||||||||||||||| ||||| || |||||||||||||||||||| ||| | |||||||| || || || ||  | ||||| |||||||         |||   |||      | ||||||   |    || |    | | | | | |                           
TGGAGCTCATTGCCTCAGAGAATTTCACGTCCCGAGCTGTGATGGAAGCTGTTGGTTCGTGCTTGACAAACAAGTACTCGGAAGGGCTTCCTGGGAAAAGgt---------tttgcctcgctcttttttttttggcttgaagtttaacgagttgtggatag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724687|gb|EE100735.1|EE100735
EST:     GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|32249299|gb|CD715118.1|CD715118
EST:     GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|161715305|gb|FC068028.1|FC068028
EST:     GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|32269544|gb|CD718703.1|CD718703
EST:     GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|110378905|gb|EC944062.1|EC944062
EST:     GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|27580664|gb|CB003359.1|CB003359
EST:     GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: gi|71862785|gb|DT011840.1|DT011840
EST:     GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG                         GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA