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GTATCTGCTTTAAATGAGGCTGTGCCAGGAAGTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttagtgtgtggagcatgcctttcccttatctatttagagacagtctgcttttcaatcctcatttttttatatgttaattaatttatgatataat...
species | Vitis vinifera |
transcript | Vv04s0008g00760.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCCEST: gi|110700486|gb|EE078578.1|EE078578
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCCEST: gi|349826052|gb|FQ415857.1|FQ415857
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCCEST: gi|349830056|gb|FQ420316.1|FQ420316
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCCEST: gi|110362125|gb|EC925639.1|EC925639
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCTEST: gi|110394078|gb|EC958525.1|EC958525
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCCEST: gi|110372710|gb|EC936897.1|EC936897
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
EST: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG GGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
genomic: GTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttag ... gttgtaacagGGACATTTAGAAAGCAATGATGGCGACCCTGAATTACTTGTTTTCATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTGCTTTAAATGAGGCTGTGCCAGGAAGTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttagtgtgtggagcatgcctttcccttatctatttagagacagtctgcttttcaatcctcatttttttatatgttaattaatttatgatataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaca