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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTTTAAAGCCAGAGCTTTTTGAGGGGATGCGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccccctttttgtttattgttctcttcaaagtttgttgttattatttttcttttgtgttccatttttctctcatcaatcttgataatgatgccttgttaaccatctatcag

Basic information

species Vitis vinifera
transcript Vv03s0097g00590.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G05280.1 (Glycine max), 5'ss of exon 2
TGTCTTTAAAGCCAGAGCTTTTTGAGGGGATGCGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccccctttttgtttattgttctcttc----aaagtttgttgttattatttttcttttgtgttccatttttctctcatcaatcttgataatgatgccttgttaaccatctatcag
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||  |||||||||||| ||||| |||| |||||||||  ||     ||| | | |||| || | ||     ||| |   |||||  ||   ||||| ||| |   | |||  | |  ||      |                             
TGTCTTTGAAGCCAGATCTTTTTGAGGGCATGCGTTTTGATTTCACCAAGATGCTCAATCAGAAGTTCTCCCTCAATCACAGgtacctttatgttttctttctatttttttattttatgaaattcaattgtt--taaagttcttctgtttattaatttgttgttgtctgatcag-----------------------------

upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G34360.3 (Glycine max), 5'ss of exon 2
TGTCTTTAAAGCCAGAGCTTTTTGAGGGGATGCGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccccctttttgtttattgttc--tcttcaaagtttgttgttattatttttcttttgtgttccatttttctctcatcaatcttgataatgatgccttgttaaccatctatcag
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||  |||||||||||| ||||| |||| |||||||||  ||     ||| | | |||| ||   | |   || || | |  | | |  ||  |||        ||| ||   |     |||||| |  || || ||  | |            
TGTCTTTGAAGCCAGATCTTTTTGAGGGCATGCGTTTTGATTTCACCAAGATGCTCAATCAGAAGTTCTCCCTCAATCACAGgtacctttatgttttctttctattttttaatttatgaaattcgattgtgtaaagttcattt--------attattaatttgctgatcttgttgttgttgtctgatcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409330|gb|CX017582.1|CX017582
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|110687534|gb|EE065054.1|EE065054
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|110730004|gb|EE106584.1|EE106584
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|352765106|gb|FQ465803.1|FQ465803
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|110698670|gb|EE076432.1|EE076432
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|110686396|gb|EE063988.1|EE063988
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
EST: gi|351046106|gb|FQ442484.1|FQ442484
EST:     CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAG                         CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA
genomic: CGGTTTGACTTTACCAAGGGGCTCAATCAGAAATTCTCACTCAGTCACAGgtagattccc ... catctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAA