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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACCCTTTGCTTGCTGAACACATGTCTGAGTTTATGGCGAGGACTCTTTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctttttgatataatttgtttcgaggttcatagtttcatgaacgttctggtcttttgatttttttagattattctttgaattgaagcataggat...

Basic information

species Vitis vinifera
transcript Vv03s0091g00080.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00080.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G26580.1 (Glycine max), 5'ss of exon 2
GAGTACCCTTTGCTTGCTGAACACATGTCTGAGTTTATGGCGAGGACTCTTTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctttttgatataatttgttt--cgaggttcat----agtttcatgaacgttctggtcttttgatttttttagattattctttgaattgaagcataggat
|||||||||||  | |||||||||||| |||| || ||||||| ||| || |||||||| ||||| || | || |  |||  | || |||||||| |  |||| |  |||     | | | ||  ||  | || |  ||       ||  | ||| |  | |  | |  || |  |   | | |  || |  |||   |       
GAGTACCCTTTTTTGGCTGAACACATGGCTGATTTCATGGCGAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataaccttacccttgtcactttattgacaagttagatgagggaatttctaaacatgttaggatgtatatatgctagaagtttaattcgttttgtctct------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714716|gb|FC064488.1|FC064488
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|30324984|gb|CD008246.1|CD008246
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|161720482|gb|FC070594.1|FC070594
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|71863664|gb|DT012719.1|DT012719
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|161712718|gb|FC062290.1|FC062290
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|32248279|gb|CD714098.1|CD714098
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|110727535|gb|EE104406.1|EE104406
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|32269752|gb|CD718911.1|CD718911
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|37184887|gb|CF604240.1|CF604240
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|30326383|gb|CD009645.1|CD009645
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|32247178|gb|CD712997.1|CD712997
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
EST: gi|46917661|gb|CN546990.1|CN546990
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTG
EST: gi|110727897|gb|EE105184.1|EE105184
EST:     TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAG                         TTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTG