1 5' 3' | 2 5' 3' | 3 5' 3' |
TATAGGTTTCTCAAAGAGAAATGCATACTCCACAGATTTCGAGGCAAACCTATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacattttctttccttatttattaaattgtcaatatatcaagggatttattgaaagaagtttgtgtcataaacttgcatgatatagaacaacaat...
species | Vitis vinifera |
transcript | Vv03s0088g00400.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|37184574|gb|CF603928.1|CF603928
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|32269456|gb|CD718615.1|CD718615
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|30130543|gb|CB915882.1|CB915882
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|110383842|gb|EC948243.1|EC948243
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|111125038|gb|EE253663.1|EE253663
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|110687557|gb|EE065101.1|EE065101
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|110377814|gb|EC942903.1|EC942903
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTCEST: gi|30125183|gb|CB910522.1|CB910522
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
EST: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAG GGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
genomic: TATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacat ... tttatttcagGGCCTGATTCCACGGGCTAAACTTTTGCTAACAATTGGAGGAACATTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGGTTTCTCAAAGAGAAATGCATACTCCACAGATTTCGAGGCAAACCTATCTAATCAAAGGGAGCGCTCCATGGCGTTGAACAGTGAAGGCCTTGAGgtttagacattttctttccttatttattaaattgtcaatatatcaagggatttattgaaagaagtttgtgtcataaacttgcatgatatagaacaacaat
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaa