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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGATACTTCAAAGGTTTCAGAAGTTCAAAAACCCGACTACATTCATGTTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagcaagttcataaacgattttccgcatagtttaccttctcttgagtagtttatctaacttatgttgtgtgtgccctgtgtag

Basic information

species Vitis vinifera
transcript Vv03s0038g04760.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S145_69V6.1 (Physcomitrella patens), 5'ss of exon 2
---AGCAGATACTTCAAAGGTTTCAGAAGTTCAAAAACCCGACTACATTCATGTTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagcaagttcataaacgattttccgcatagtttaccttctcttgagtagtttatctaacttatgttgtgtgtgccctgtgtag-----------------------------------------------
     |  |||    |||      |    ||   || |  |||||||||||||| ||||| || ||||| || ||||| |||||||||||||| || ||||| ||||    | || ||  ||     |||||   | | ||   |||  || |  |  | | |||  |  | || ||    |       |                                                
AGACTCGAATAACCGAAACA---AAATTCTTTCCAAGCAGGACTACATTCATGTGCGAGCTCGACGAGGACAAGCCACCGACAGCCACAGCCTTGCGGAAAGGgtaaaatcccagatcccaag----tttccttctcgattcgattcgattcataacctcaacta-ttagtattctgaactcgtcacacatctctgtagcactccctgacgtgagtcatcatgttgtacgctcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360400|gb|EC923471.1|EC923471
EST:     GCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGA                         GTGAGAAGAGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
genomic: GCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagca ... ccctgtgtagGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
EST: gi|33408116|gb|CF213743.1|CF213743
EST:     TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGA                         GTGAGAAGAGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
genomic: TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagca ... ccctgtgtagGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
EST: gi|110357551|gb|EC921175.1|EC921175
EST:     TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGA                         GTGAGAAGAGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
genomic: TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagca ... ccctgtgtagGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
EST: gi|110358413|gb|EC922605.1|EC922605
EST:     TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGA                         GTGAGAAGAGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT
genomic: TTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAgtaagtagca ... ccctgtgtagGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTT