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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttagtttgttttattcatttgacctctgtgctaac...

Basic information

species Vitis vinifera
transcript Vv03s0038g03270.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttagtttgttttattcatttgacctctgtgctaac-------
|| || || | | |||| ||||  ||||| || || ||||||||| | || ||||| ||||||||||| |||||||||||||| |||||| | |||||||||||||||        || ||   | |  | | ||    | |||||  | |  ||||| |   || |  |||  || |||||||    |  |||   |         
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgttt--------aacttctctctcttttttttt-ttttaatctttactcttgtt-tatctcatcttttcattcattcattcattcattgtttcatttattcag

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttc--tggttcttagtttgttttattcatttgacctctgtgctaac
|| || || ||| |||| ||||| ||||| || || ||||||||| | || ||||| ||||||||||| ||||| |||||||| |||||| | ||||||||||||| ||   |      | | | | | ||  |||     | || | |   ||  |||  || ||  |   ||| || ||| |||                
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-------------

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttag--tttgttttattcatttgacctctgtgctaac------------------------------------------------------------------------------------------
 || | || ||| ||||||| ||||| |||||||| ||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| |||   |     ||| | |      |||   |  ||    |   | || ||  || ||  |    || |     | |||||    | | || ||                                                                                            
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctg---ggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 3
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgtttt-catttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttagtttgttttattcatttgacctctgtgctaac--
||| | |  ||||| ||||| || |||||||| ||||||||| |  | ||||| || ||||| ||||||||||| ||||| || |||||||| |||||||||| ||      ||||   | ||     | |   | |||   ||| |  |  || | ||    |  | | | | || | |  |   |   | || ||||||  
AGATTGGTGAATCTAATTGGGTACTGCTGTGAGGGTGATGAGCGTCTTCTTGTCGCGGAGTATATGCCAAATGACACTCTCGCAAAGCATTTGTTCCACTgtaagtgacatctttgctgtatgggaggtctg-ataacaagataacct-tttctgtctttcaatgatgattctattctgta-agaagtgttttgcgctaacat

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 3
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgtttt-catttggaatttg-aattttgtatgttacactctaatcgatgcctttgttc--tggttcttagtttgttttattcatttgacctctgtgctaac
||||| |  ||| ||||||| || |||||||| ||||||||| | ||||||||||| ||||| ||||| ||||| |||||||| || ||||| || ||||||| || |   |||||   | || ||   |  ||   | |  | | ||  |  ||| |     |||||  ||   |   || |   |  ||  | |||      
AGACTGGTGAATTTGATTGGATACTGCTGTGAAGGTGATGAGCGTTTGCTTGTTGCGGAGTATATGCCGAATGACACTCTTGCGAAACATTTGTTTCACTgtaagtgtcatatttgtcgtgtggaagccttcattacagaggcaattcattttcttcgagaggtggtttgtaacctaacttttctgtgagaaatgtgttg----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128409|gb|CB913748.1|CB913748
EST:     AAATGATACTCTTGCTAAGCATTTATTCCACT                         GGGAAAATCAAACCATTGAATGGGCCATGCGTTTGAGAGTAGCCCTTTTCA
genomic: AAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttc ... ttcttgacagGGGAAAATCAAACCATTGAATGGGCCATGCGTTTGAGAGTAGCCCTTTTCA