1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaatttttcttagctgcattggctgtatatgtttatggtaaagaattttcttacctgccaaccgg...
species | Vitis vinifera |
transcript | Vv03s0038g02650.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|71864084|gb|DT013139.1|DT013139
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|71862550|gb|DT011605.1|DT011605
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|71864104|gb|DT013159.1|DT013159
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|110684850|gb|EE062597.1|EE062597
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|110684787|gb|EE062462.1|EE062462
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|294966370|gb|GW839477.1|GW839477
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: GGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|156737705|gb|EV241826.1|EV241826
genomic: GGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|110730859|gb|EE108423.1|EE108423
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCANCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|110699744|gb|EE077009.1|EE077009
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|110699328|gb|EE076229.1|EE076229
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTEST: gi|71864275|gb|DT013330.1|DT013330
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
EST: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGA GGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
genomic: ACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttact ... ttttttacagGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaatttttcttagctgcattggctgtatatgtttatggtaaagaattttcttacctgccaaccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat