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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc...

Basic information

species Vitis vinifera
transcript Vv03s0017g01350.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 2
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgc-gttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc-------
||||| ||||| || || || || || || ||||||||||||||||| |||||||| ||||| |||| ||         |||  | | | | | |||    |||| | | |||| |||| ||   |     |  | ||   |  ||||  | ||| || |     |       
TTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagt------gctcctccttctctctctctcttgatgctgatctgtt-ctga-aatgcgtggagatctcttgcatcgtgttaatctagcttgtccgctcggtcctt

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 2
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgttttt-ttttcttcctatgcgttttgttgctgagaa-aatgatagaaattattagttaatgttgttttaggttttttttcc
||||| ||||| || || || || || || ||||||||||||||||| |||||||| ||||| |||| ||  |||      || |       |||  ||| | | |    | ||   ||||    || | | | |    ||   |    |    |    || | |  
TTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtattctcgccgccgctcccccgtttgtttcgtttccccaatattagagagagtggtgttggtagtggcaagccgaatcagcgcgaacccttgtgt--

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgtttt------aggttttttttcc
||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||| ||||||||||   ||  | |       ||||||||  ||   |    ||| ||   |       |  | |    | || ||   |  || |||      | |||  |||   
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactc------ttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 1
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc----
||||| ||||| | ||| || || ||||| ||||||||||||||||| || |||||||||||||||||| |  |  | |        ||| |||  ||  |  | |||   ||  |||| |  |  ||    || || ||     | || |   ||  |||        
TTCAACATCGCGAGTCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTgtaatcacttcactcttt---ctttctttctttttttggtgttaaatttttgagtatttc-tacttgttcttcgtggtgttcgtgtgttgtgctttgagagaaa

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattccca---cgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc
|||||  | || ||||| ||||| ||||| ||||||||||||||||| || || || ||||||||||||| |||    |  |     | | ||  ||  ||  ||   | | | | | ||  |   ||  |||   ||||  ||  ||||  | ||  |   | ||  
TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTgtaagattttgcttctctgtttcatcttcattcatttttaatagatatttcg-tgctaggttgccagat-ctattgattggtgtttgtatatatcactgtta-

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattc---ccacgtttttttttc---ttcctatgcgttttg-ttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc
|||||  |||| ||||| || || || ||||| ||||| |||||||| ||||||||||| |||||||||| | |    ||     ||| |||| ||      ||  | | | ||| | ||  ||||   |   |   ||  ||  | ||      |  ||   ||       
TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGACGATCAAAAACTgtaagatctttgctttaaatcacattttcttcatggatttgtttacatttggcttattgagtgtagagtgtgaacaatctgctatgaagttcgtaaaatt-------

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 1
------TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctt-----tcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc
       |||| ||||| ||||| || || ||||||||||||||| |||| ||||| ||||||||||| ||||||||||     |   ||  |    |    |  |  |  | | | | || | |   ||                                              
ATGAAGCTCAACATCGCCAATCCCACCACGGGATGTCAGAAGAAGGTCGACATTGACGACGATCAGAAGCTgtaagcttgtcgcttggatctctggatggaatggtgattttgttc-tcttttcgtgcag----------------------------------------------

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 1
-----------------------------------TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctt-----tcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc
                                    |||| ||||| ||||| || || ||||||||||||||| |||| ||||| ||||||||||| ||||||||||     |   ||  |    |    |  |  |  | | | | || | |   ||                                              
CCTAGAGGAGGAAGGAGAGGCGCAGCGCGATGAAGCTCAACATCGCCAATCCCACCACGGGATGTCAGAAGAAGGTCGACATTGACGACGATCAGAAGCTgtaagcttgtcgcttggatctctggatggaatggtgattttgttc-tcttttcgtgcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041278|gb|FQ447405.1|FQ447405
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|161708372|gb|FC057494.1|FC057494
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAAGATCTCACAGGAAGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|71858575|gb|DT007630.1|DT007630
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110709928|gb|EE085815.1|EE085815
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|30254132|gb|CB971147.1|CB971147
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|30303751|gb|CB980545.1|CB980545
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110686550|gb|EE064318.1|EE064318
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|34549826|gb|CF518058.1|CF518058
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110703116|gb|EE079679.1|EE079679
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110692010|gb|EE070768.1|EE070768
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110686044|gb|EE063293.1|EE063293
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|161714863|gb|FC063014.1|FC063014
EST:     GATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACGAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: GATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|30303557|gb|CB980351.1|CB980351
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110690121|gb|EE066941.1|EE066941
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|77584224|gb|DV221176.1|DV221176
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110703874|gb|EE081192.1|EE081192
EST:     CTCGAGATTGATGACCATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110687325|gb|EE064639.1|EE064639
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351031319|gb|FQ445344.1|FQ445344
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349818266|gb|FQ409041.1|FQ409041
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|71872051|gb|DT021106.1|DT021106
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110686489|gb|EE064185.1|EE064185
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351043763|gb|FQ431315.1|FQ431315
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110705320|gb|EE082057.1|EE082057
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|77582325|gb|DV220132.1|DV220132
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110702349|gb|EE080961.1|EE080961
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|161718545|gb|FC065376.1|FC065376
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|33406814|gb|CF212441.1|CF212441
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|161710419|gb|FC061114.1|FC061114
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|294967313|gb|GW836667.1|GW836667
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110687004|gb|EE064045.1|EE064045
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|71858106|gb|DT007161.1|DT007161
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110695508|gb|EE073605.1|EE073605
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110689843|gb|EE066424.1|EE066424
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|33407688|gb|CF213315.1|CF213315
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|161709975|gb|FC058485.1|FC058485
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349814419|gb|FQ398859.1|FQ398859
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110387508|gb|EC952179.1|EC952179
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110686570|gb|EE064362.1|EE064362
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|71865483|gb|DT014538.1|DT014538
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|352798903|gb|FQ480752.1|FQ480752
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351022641|gb|FQ428550.1|FQ428550
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349818085|gb|FQ408860.1|FQ408860
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|30135834|gb|CB921172.1|CB921172
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349812997|gb|FQ411237.1|FQ411237
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349831058|gb|FQ420728.1|FQ420728
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110687107|gb|EE064226.1|EE064226
EST:     CGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351012895|gb|FQ430458.1|FQ430458
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGACCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|352793839|gb|FQ481993.1|FQ481993
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|349823129|gb|FQ400108.1|FQ400108
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACGAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|33407408|gb|CF213035.1|CF213035
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110708752|gb|EE086649.1|EE086649
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110692741|gb|EE068362.1|EE068362
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110732397|gb|EE107650.1|EE107650
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351021777|gb|FQ437162.1|FQ437162
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110707350|gb|EE083672.1|EE083672
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110689801|gb|EE066341.1|EE066341
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|110730182|gb|EE106970.1|EE106970
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
EST: gi|351046234|gb|FQ442612.1|FQ442612
EST:     CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT                         CCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT
genomic: CCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttc ... ttgtgaacagCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgttttaggttttttttcc

- - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaa