1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCTTCAGATATCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGACGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaattctttgtggtgctaattaatgccaggaatttgggtttgtgaacagttcaaaatttctttgcttgccctgagctttgcctgaggttgaatgc...
species | Vitis vinifera |
transcript | Vv02s0154g00140.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAG GGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTGEST: gi|110685871|gb|EE062980.1|EE062980
genomic: CGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaatt ... acgttgacagGGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
EST: TGAATGGATATCTGTTCGCACTGGCATTCATAATCGACGAGTTCTCTCAN GGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTGEST: gi|71864497|gb|DT013552.1|DT013552
genomic: CGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaatt ... acgttgacagGGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
EST: TGAATGGATATCTGTTCGCACTGGCATTCATAATCGACGAGTTCTCTCAG GGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTGEST: gi|110394481|gb|EC959504.1|EC959504
genomic: CGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaatt ... acgttgacagGGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
EST: CACTGGCATTCGTAACCGACGAGTTCTCTCAG GGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTGEST: gi|351018419|gb|FQ439231.1|FQ439231
genomic: CACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaatt ... acgttgacagGGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
EST: TGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAG GGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
genomic: CGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaatt ... acgttgacagGGAAAGATAGCTTGACAGCTTTGGCTGTAGAGGCAGCGAAGAGGGCTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTTCAGATATCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGACGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaattctttgtggtgctaattaatgccaggaatttgggtttgtgaacagttcaaaatttctttgcttgccctgagctttgcctgaggttgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaat