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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccgtatgttgatattgcaattaaataatttgttgtcag

Basic information

species Vitis vinifera
transcript Vv02s0154g00110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtat--------------gtgcaaagagttctttccttccct--ttccaaccgtatgt-tgatattgcaattaaata---atttgttgtcag-----------
      ||||      |||||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||||||  |  ||||| | ||||||||  ||||||| |||   ||||   | ||  |||              ||  ||  |  ||  | ||||  |  |||  |  |||  |   || || || ||  ||     ||  || |||            
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttct-ttccttccctttccaaccgtatgttgatattgcaattaaataatttgttg-----tcag
|  | | ||| | |  || ||||| ||  | ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||| |||| |||     ||   ||     |      |    ||||| ||  ||   |  |  |  ||||| || ||     |||   |  | | |||     ||||
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaataaacgcaaaccttttgtctattaccttactctgttctgttttttgtgtggcttatagtatgatgctaaaaagattgttttttcttttgatctttcag

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccgtatgttgatattgcaattaaataatttgttgtcag
|  | | ||| | | ||||||||||||  ||||||| ||||||||||| || ||||||||||| || ||||| ||||| || ||| | ||||||||||| ||||  || |   |           | |||      |||| |   ||    | || || ||||  | | ||      ||   ||  |   | | ||
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaactaaaatc---------tctgttttgttagttttgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858272|gb|DT007327.1|DT007327
EST:     CTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCT                         ATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATT
genomic: CTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaatt ... ttgttgtcagATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATT