1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTATCGGTGGGTATCCCCGCGGACACAACTTCGCCGACCAGTCACCAAGAGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacctctctctttcgatgaatgaaccaaaaaaaatctactcatgctgcattctatgatgagaggcaggcctgcagccatgcttatgcttaaaaa...
species | Vitis vinifera |
transcript | Vv02s0109g00430.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGACTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|161716591|gb|FC067462.1|FC067462
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|161720887|gb|FC070990.1|FC070990
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAATTTGATAGATTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|71858679|gb|DT007734.1|DT007734
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGACTGGCTTCAATGGCTAGGAAATATAAAGTCTACA
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTATCGGTGGGTATCCCCGCGGACACAACTTCGCCGACCAGTCACCAAGAGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacctctctctttcgatgaatgaaccaaaaaaaatctactcatgctgcattctatgatgagaggcaggcctgcagccatgcttatgcttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa