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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag

Basic information

species Vitis vinifera
transcript Vv02s0033g01120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 1
---TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag
   ||| |||||||| |||    || |||| ||| ||||  || |   |||||| ||||||||   ||| |||||||||||||||||||| ||||||||||||||||  || |  |    |    || | | |||      |   |   |||          |||||         ||| || |  ||| |  || ||    ||| ||||||
TTCTCCTAAGGAATCCTCA---GGTTCTCTGCAAGTTAAGCCAATCAGTTTCCCTGAATGCAGCTTGGACTATCAAGACTACACTCCATGCACAGATCCAAGGgtatttattaaatggcagtcatttgctaattt------attgtaggatttgtagaagaatgcttc--------atttctga--ttgagcatgcataataatt-ttacag

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G35220.3 (Glycine max), 5'ss of exon 2
---TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag
   ||| ||| |||| |||    || |||| ||||||||  || |   |||||| |||||||| |  || |||||||||||||||||||| |||||||||| ||||| ||    |       | ||||     | || |||         || |  | ||          |||   |||||| |    |  ||  ||  | ||  |      
TTCTCCTAAGCAATCCTCA---GGTTCTCTGCAAATTAAGCCAATCAGTTTCCCTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAGgtattaaatggt-----agtcatttgctaatactgtaggat------ttgtagaaga---------atgtttcattgctgattgagcatgcataattttacag------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G17500.1 (Glycine max), 5'ss of exon 2
TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag
 |||||||| || |||   ||| |||| ||||||||||       ||| || ||||||||    || |||||||| ||||||||||| |||||||||||||||  ||| |    || ||| |    |    || ||      |   || ||  || |||||          ||| |  |   ||||  |  | ||   ||   ||||||
CCCCAAGGAGTCATCAATAAGTTCTCTGCAAATTAAATACACCAGTTTTCCTGAATGCAGCGCTGACTATCAAGATTACACTCCATGCACAGATCCAAGGgtaaaaataaa---attgctaacagtag---tccat----tttctgatactatagaatttgtaaaaa----aaagttttcttattgattaaggatgcttaaatttacag

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G08120.1 (Glycine max), 5'ss of exon 2
TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcact--tcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag
 | |||||| || |||   | |||||| ||||||||||   |   ||  || |||||||| |  || | |||||| ||||||||||| |||||||||||||||  ||| |||  | || |  | |||    ||||| |      ||  ||  |  |||| ||    | |    |  || | |  ||||  |  ||||   ||   || |||
CCACAAGGAGTCATCAATAATTCCTCTGCAAATTAAATACATCAGTTATCCTGAATGCAGCATTGACTTTCAAGATTACACTCCATGCACAGATCCAAGGgtaa-aattactaataatagtctctttt---tttcttt------tttaatgttataggactta---tagaagaatgtttcct-tattgattaagtatgcttaaattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110705273|gb|EE081966.1|EE081966
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|30299339|gb|CB976133.1|CB976133
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCGTGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|37183944|gb|CF603298.1|CF603298
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110712136|gb|EE089409.1|EE089409
EST:     GGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGC
genomic: GGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110720926|gb|EE097340.1|EE097340
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110724515|gb|EE100409.1|EE100409
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110724258|gb|EE099928.1|EE099928
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|71855537|gb|DT004592.1|DT004592
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110705287|gb|EE081996.1|EE081996
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|37183817|gb|CF603171.1|CF603171
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110685058|gb|EE063045.1|EE063045
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110723381|gb|EE100627.1|EE100627
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT