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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatctacatttgatcctcgctgttcctatgtattgcaaacaacatttattgtagtttctcactttgcaaatgaagcctccttatttactaggat...

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G27380.1 (Glycine max), 5'ss of exon 2
TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttg--tgaatctacatttgatc--ctcgctgttcctatgtattgcaaacaacatttattgtagtttctcactttgcaaatgaagcctccttatttactaggat----
|||| | ||||||||| |  || || || || ||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||||||||||||  |  |  |     ||| |     ||  |||||   |||||         ||| || |  |||   | ||||| |||     |   |  |||   | |      
TGGAGGGTCATGATGGGGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAGGATTGCATGGCCTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGgttgattacaattttgcatgaccaataagcatttcctgactattgt--------tttgtttttatttagtagtttgctaattggtacctttggtttggaatgtgtgta

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 2
TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttg----tgaatctacatttgatcctcgctgttcctatgtattgcaaacaac-atttattgtagtttctcactttgcaaatgaagcctccttatttactaggat
|||| | ||||||||| |  || || || || || |||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||||||||||||      | | | |||  |      ||  |||||   |||||     |   ||||||| |  |||   | |||||  ||     |   |  |||        
TGGAGGGTCATGATGGGGTGAGCAAAGGGAAATATACTATTGGGCTTGGACAGGATTGCATGGCCTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGgttgattacaattttgcataagcaataagcatttccttactattgtttttatttatttattattatttagtagtttgcttattggtacctttggtttgga-----

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S154_103V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgt---tgtgaatctacatttgatcctcgctgttccta-tgtattgcaaacaacatttattg--tagtttctcactttgcaaatgaagcctccttatttactaggat
|||| |  || ||||| |  || || ||||||||||||||||| |||||||||||| |  | || |||||  | ||  | || || || || || |||||||   |    ||  | || || |  | |  ||| | | | | ||        | ||| | |  | |  |||||  |    |     | |    |   ||       
TGGAGGAGCACGATGGAGTGAGCAAAGGAAAGTACACTATTGGTCTTGGACAAGACCGGCTTGCCTTCTGCACCGATCTTGAGGACGTTATTTCCATGAGgtacctcaccattcaaatctgctattggtggttgcgagtttcttatttttctcttttgtagattggactctcagatcatgagatgtggcgaactggctat------

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S180_129V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgt----------tgtgaatctacatttgatcctcgctgttcctatgtattgcaaaca-acattt--attgtagtttctc--actttgcaaa-tga--agcctccttatttactaggat-----------------------------------------------------
|||| |  || || |||| ||| |||||||||||||||||||| ||||| |||||| |  | || |||||  | ||  | || ||||| || || |||||||          ||  |  |     |||    | |  ||| || |   |  |         |||  |||  || |  ||  ||   ||||| |||  |||   ||| | |  | | ||                                                     
TGGAGGAGCACGACGGTGTAAGCAAGGGAAAGTACACTATTGGTCTTGGCCAAGACCGGCTCGCTTTCTGCACCGATCTTGAGGATGTTATTTCCATGAGgtaccttcccactgcaatccgctgcttggggttgggggtttctgttgttcccgtgtgtgtgtttggatttcagatcatcggacggagcaaactgacgagcactcttgtcttttggaattggtgccagtcttgttaaccttggtattttcggcttgtttcggtgggcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387333|gb|EC951991.1|EC951991
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110698402|gb|EE075860.1|EE075860
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110709565|gb|EE085137.1|EE085137
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71860473|gb|DT009528.1|DT009528
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|351015524|gb|FQ447353.1|FQ447353
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110729426|gb|EE105370.1|EE105370
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110699371|gb|EE076321.1|EE076321
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110691612|gb|EE069914.1|EE069914
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|294966823|gb|GW837842.1|GW837842
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71860824|gb|DT009879.1|DT009879
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTCGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71861327|gb|DT010382.1|DT010382
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71860522|gb|DT009577.1|DT009577
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|352778070|gb|FQ467123.1|FQ467123
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|33401501|gb|CF207128.1|CF207128
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|34545276|gb|CF513508.1|CF513508
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|352777936|gb|FQ466989.1|FQ466989
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110699704|gb|EE076934.1|EE076934
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|30297572|gb|CB974366.1|CB974366
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110383242|gb|EC947601.1|EC947601
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71862441|gb|DT011496.1|DT011496
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71859989|gb|DT009044.1|DT009044
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|352785913|gb|FQ475916.1|FQ475916
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|352794809|gb|FQ475304.1|FQ475304
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110698626|gb|EE076340.1|EE076340
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|30255111|gb|CB971558.1|CB971558
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864278|gb|DT013333.1|DT013333
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71862577|gb|DT011632.1|DT011632
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGATAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71860705|gb|DT009760.1|DT009760
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110698484|gb|EE076038.1|EE076038
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|161719369|gb|FC064848.1|FC064848
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71861812|gb|DT010867.1|DT010867
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|27580267|gb|CB002962.1|CB002962
EST:     GGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: GGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|110727089|gb|EE103473.1|EE103473
EST:     GGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: GGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864766|gb|DT013821.1|DT013821
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71862941|gb|DT011996.1|DT011996
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|349823636|gb|FQ415046.1|FQ415046
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864669|gb|DT013724.1|DT013724
EST:     AGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: AGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864506|gb|DT013561.1|DT013561
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGATAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71863130|gb|DT012185.1|DT012185
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71861453|gb|DT010508.1|DT010508
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71860640|gb|DT009695.1|DT009695
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864508|gb|DT013563.1|DT013563
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71857514|gb|DT006569.1|DT006569
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|71864646|gb|DT013701.1|DT013701
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
EST: gi|351020029|gb|FQ439846.1|FQ439846
EST:     CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAG                         TTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA
genomic: CAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatc ... cattgaacagTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGgttgtgaatctacatttgatcctcgctgttcctatgtattgcaaacaacatttattgtagtttctcactttgcaaatgaagcctccttatttactaggat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa