1 5' 3' | 2 5' 3' | 3 5' 3' |
TTCAGTTTCGGGTGGTTTCACACTGGAGATGTCGGGTTTCTGGACTCCGATGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattttaacagagcatcattattggcatctcacatttgtttatgtttgtgtttgtggaccatcaactgggttgtttcaaaattttcag
species | Vitis vinifera |
transcript | Vv02s0025g03660.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|30321184|gb|CD004446.1|CD004446
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|27580993|gb|CB003688.1|CB003688
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|32458226|gb|CD799400.1|CD799400
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: GATATTTGCATCTTGTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|32458106|gb|CD799280.1|CD799280
genomic: GATATTTGCATC-T-TGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: GATATTTGTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|110382454|gb|EC946745.1|EC946745
genomic: GATA-TT-TGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|110366809|gb|EC930727.1|EC930727
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|83275371|gb|DV939379.1|DV939379
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGGEST: gi|110363490|gb|EC927083.1|EC927083
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
EST: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAG GGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
genomic: TGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattt ... aaattttcagGGGAGAAGATATCGCCAATTGAAGTAGATGCGGTGCTTCTGTCTCATCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTTTCGGGTGGTTTCACACTGGAGATGTCGGGTTTCTGGACTCCGATGGATATTTGCATCTTGTTGGGCGAATCAAGGAGCTTATCAACAGAGGAGgtattgattttaacagagcatcattattggcatctcacatttgtttatgtttgtgtttgtggaccatcaactgggttgtttcaaaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG