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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCCCCTGTGCAGAAATTAGCAGACCACATCTCTAAATACTTTGTTCCTCTGgtaaacatctaatatacatttctcctctccttcagtttcttttgttttctaaattgagtgataagtactataaattatgtgaaaatgaatgataatttaatccaggcctttgcctacaactgcctatcttttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03630.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G32190.1 (Glycine max), 5'ss of exon 3
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCCCCTGTGCAGAAATTAGCAGACCACATCTCTAAATACTTTGTTCCTCTGgtaaacatctaatatacatttctcctctccttcagtttcttttgttttctaaattgagtgataagtac-tataaattatgtgaaaatgaatgataatttaatccaggcctttgcctacaactgcctatcttttgcag
||||||||| |||||||||   |||||||||||||| |||||||| || || ||||||||||| || || |||| ||| |||||||||||||| |||||||||   |  ||    ||||     | ||  || |  || |||| || | | | |   ||  | |  || | |   |||  ||||     ||| | || || |  ||  |||    |  ||  |  |   || |||||
TGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCTAAATACTTTGTGCCTCTGgtagttaattatataacata----cgctttttaaaattatttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatata-tatagtacttacttttgaagggttttctttgtgcag

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G01680.1 (Glycine max), 5'ss of exon 4
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCCCCTGTGCAGAAATTAGCAGACCACATCTCTAAATACTTTGTTCCTCTGgtaaacatctaatatacatttctcctctccttcagtttcttttgttttctaaattgagtgataagtac-tataaattatgtgaaaatgaatgataatttaatccaggcctttgcctacaactgcctatcttttgcag
||||||||| |||||||||   |||||||||||||| |||||||| || || ||||||||||| || || |||| ||| |||||||||||||| |||||||||   |  ||    ||||     | ||  || |  || |||| || | | | |   ||  | |  || | |   |||  ||||     ||| | || ||      |   || | |  ||  |  |   || |||||
TGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCTAAATACTTTGTGCCTCTGgtagttaattatataacata----cgctttttaaaattttttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatat--agtacttactttgaagggttttctttgtgcag

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G42790.1 (Glycine max), 5'ss of exon 2
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCCCCTGTGCAGAAATTAGCAGACCACATCTCTAAATACTTTGTTCCTCTGgtaaacatctaatatacatttctcctctccttcagtttcttttgttttctaaattgagtgataagtactataaattatgtgaaaatgaatgataatttaatccaggcctttgcctacaactgcctatcttttgcag
||||||||| ||||||||||  ||||| |||||||| |||||||||||||| ||||| ||||| || || || | ||| || ||||||||||| ||||||||||  ||  | | |    |       |     | ||| |||  |||| | || |   || |  || || ||||       |   || ||| |  ||   | |||                               
TGCTCTTTCGCAGATTGTTCGTCTTGTGGAGTCAGCTCAGATGGCTAAAGCGCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGgtaattatgaattgtgtgatgtaa---tgaaggaatttgtttatttttattaaatccttgttt-gtgct-taaa-------agggtggatgtt--ttctgtgcag-------------------------------

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 2
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCCCCTGTGCAGAAATTAGCAGACCACATCTCTAAATACTTTGTTCCTCTGgtaaacatctaatatacatttctcctctccttcagtttcttttgt---tttctaaattgagtgataagtactataaattatgtgaaaatgaatgataatttaatccaggcctttgcctacaactgcctatcttttgcag
|||||| || ||||||||||  ||||||||||| ||||| ||||||||||| ||||| || ||| | || || || || |||||||| ||||||||| |||||| | |   |   ||   | |  |||   |  | |  ||   |   ||| |  || |||| | | | |||| |   | | ||   ||   ||  | ||| ||       |||||                       
TGCTCTCTCGCAGATTGTTCGACTTGTTGAGTCTGCCCAAATGGCTAAAGCTCCTGTCCAAAAAATTGCTGATCATATTTCTAAATATTTTGTTCCTATGgtaagcctagtactaactacttttttctgagtttgctcattagatatgtttattgatggagtcagaggaactaca---tctatgctcatcggtgccatttttattt---tttttgcag---------------------