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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATTTGGTCCTAAAATTGTGTCAAAGGAGAAAAATGCACATCAATCTCACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttttttacactgcctatatgctctagatagccatgcataactgtcttcacatttctcatattggaaattgtactatattctgatgatgtcagtgaatttattattttggttctcttag

Basic information

species Vitis vinifera
transcript Vv02s0025g03400.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823521|gb|FQ414931.1|FQ414931
EST:     ACCTTACTCTTTCTGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
EST: gi|110730963|gb|EE108639.1|EE108639
EST:     ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
EST: gi|110719096|gb|EE096681.1|EE096681
EST:     ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
EST: gi|110686052|gb|EE063308.1|EE063308
EST:     ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
EST: gi|110689976|gb|EE066669.1|EE066669
EST:     ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
EST: gi|110685071|gb|EE063074.1|EE063074
EST:     ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAG                         CTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT
genomic: ACCTTACTCTTTCAGATCCCCCTGATTGTTGCACTGCACCGAGGAAACAGgtttttcttt ... gttctcttagCTTGCTAGAGATGTCATTATGGTGCACCGAGGCAACTGTAGATTCACAACT