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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgctttcttgtcttccgtccccgtaaatttggataaattgagcagcttttgaaggtttcgtggtttgtttgctcgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g02890.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g03020.1 (Oryza sativa), 5'ss of exon 2
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgctttcttgtcttccg--tccccgtaaatttggat----aaattgagcagcttt---tgaaggtttcgtggtttgtttgctcgcag
| ||||||||||||| |||||| | ||||| ||||| |||||||| | ||| ||||| ||||| |||||  | || ||||| || || || || | ||||||| | ||       ||   ||  | |  |    || ||  || ||    ||  || | |    |   |  | || |  | |  || ||  | ||||
TGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGACGGCCGAGAAGGCCGGCTACATCATCCCTGTCGAGATCACCGTGTTCGATgtgagcttaaaatcgtcaattccactgaatgtgtgtgaacatgcatctctaatgtgggtactcctaattatatgtgtgtttgcctggttttttgcag

upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G10300.1 (Glycine max), 5'ss of exon 2
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgct-----------ttcttgtcttccgtccccgtaaatttggataaattg-agcagcttttgaaggtttcgtggtttgtttgctcgcag
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| | || ||||| |||||||| |||||||| |||||||| ||  |||  | |||           || || |||||        |    ||   | ||| | |       |   | ||||         |   || | ||
TTCCAAGGGTGTCAATATTATGGCTTTCTGTAAGGATTACAACGCTAGAACCGCCGACAAGCCCGGTTATGTCATTCCTGTGGAAATTACAGTCTACGACgtcagttcttagctctgctctgctctttttatcttcttctttttttccctttcctgaatcgcaatttgcatcatatgttttacttaccttacccttgtag

upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G40920.1 (Glycine max), 5'ss of exon 2
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgctttcttgtcttccgtccccgtaaatttggataaattgagcagcttttgaaggtttcgtggtttgttt-gctcgcag---------
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| | || ||||| |||||||| |||||||| |||||||| ||  |||  | ||| |  | |  ||  |         ||    |        |     | | |  ||   |  | |||||  ||  ||          
TTCCAAGGGTGTCAATATTATGGCTTTCTGTAAGGATTACAACGCTAGAACCGCCGACAAGCCCGGTTATGTCATTCCTGTGGAAATTACAGTCTACGACgtctgttcttagctctgctctgctcttttttatcttcttcttttttccctttcgtgaatcgcaatttgtatcatatgttttacttacaacccttgtag

upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G32990.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgctttcttgtcttccgtccccg----taaatttggataaattgagcagcttttgaaggtttcgtggt--ttgtttgctcgcag------
||| ||||| || || || |||||||| || |||||||| ||||| || || || || || ||||| ||| | |||||||||||||| || |||| ||||||| ||||    || |||   || |    |  |    |   ||||  |||  | |  |    |   |  | | |||||  ||| ||      |       
TTCTAAGGGAGTTAACATTATGGCTTTTTGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATCACTGTCTTCGATgtgagttttgtactctctctactacaaatcttgagtttttgtttgattaagctaaagaagagtaacatttgtggtggtaattggttatcaaaaatgtgtt

upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S46_69V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtt-tctcgctttcttgtcttccgtcccc-gtaaatttggataaattgagcagcttttgaaggtttcgtggtt--tgtttgctcgcag--------
|||||||||||| || || ||||||||||| ||||| || ||||| | ||| || |||||| |||||||| | || || || || || || || ||||||||  ||  |  |    |||| |||||  ||||  ||     |   |  | |||      || ||  |  | |    |  || |    ||||         
TTCCAAGGGTGTCAACATTATGGCTTTCTGCAAGGAATATAATGCCAAGACTGCTGACAAGCCTGGCTATATCATCCCCGTCGAGATCACAGTTTACGATgtatgtggttccagcgtcttttcttcgttccctagtgctcatttttgtagtgatttatgttagactgaattgaaaatgctgctcatacgcattgcaatga

upper sequence: Vv02s0025g02890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ32645 (Selaginella moellendorffii), 5'ss of exon 1
TTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttctcgctttcttgtcttccgtccccgtaaatttggataaattgagcagcttttgaaggtttcgtggtttgtttgctcgcag
||||||||| || || |||||||| ||||| ||||| ||||| || ||||| ||||||||||| |||||  |||| || || || ||||| |||| ||| ||| | | |     | ||  |  ||      |  |||| | |  ||||  ||                                    
TTCCAAGGGCGTTAACATCATGGCCTTCTGCAAGGAATACAACGCCAGGACGGCCGACAAGGCCGGCTACATTATCCCCGTGGAGATTACAGTCTTCGACgtgagctacctctctcctcctagtcgagtgactgaaatgtcgccaaatgcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014600|gb|BQ799634.1|BQ799634
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|352772706|gb|FQ473744.1|FQ473744
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|351023434|gb|FQ432817.1|FQ432817
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|351029909|gb|FQ427749.1|FQ427749
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAC                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110424157|gb|EC990513.1|EC990513
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110688229|gb|EE066541.1|EE066541
EST:     CCGCCGACAAAGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110386065|gb|EC950637.1|EC950637
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110385403|gb|EC949924.1|EC949924
EST:     CCGCCGACAAAGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|349827733|gb|FQ422601.1|FQ422601
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|349829810|gb|FQ422123.1|FQ422123
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110389777|gb|EC954644.1|EC954644
EST:     CCGCCGACAAAGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110377936|gb|EC943039.1|EC943039
EST:     CCGCCGACAAAGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
EST: gi|110374264|gb|EC938933.1|EC938933
EST:     CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGAT                         GATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC
genomic: CCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATgtgggtttct ... ttgctcgcagGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTC