1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcataacatgaactttatatagatcatagatgtgatttttggtggaataatgaaatacattttaaagttctgtaatacattaaaatactgcattcttatgtgtactaatttatttgataactcttgctggaatgcag
species | Vitis vinifera |
transcript | Vv02s0025g02550.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|38516575|gb|CF983750.1|CF983750
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGANCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|37186405|gb|CF605758.1|CF605758
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|38516609|gb|CF983784.1|CF983784
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCGGATAGCCCCGTGACCACAGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|71866312|gb|DT015367.1|DT015367
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|110372983|gb|EC937181.1|EC937181
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTEST: gi|349825263|gb|FQ417984.1|FQ417984
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
EST: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAG TTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
genomic: TTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcat ... tggaatgcagTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGgtagcatcataacatgaactttatatagatcatagatgtgatttttggtggaataatgaaatacattttaaagttctgtaatacattaaaatactgcattcttatgtgtactaatttatttgataactcttgctggaatgcag
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