1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TCCAAAGAAGAAACCTGAGGTGACTGATGGTCCAATTCTAACTGAGCGTGACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaaccccagtaacatattgaccatactactagattatggtcacatttaagtgggatctttttcattatgttgttcaagacctagggactgtgttatattgttatcatttttattctcatttttcttattatacag
species | Vitis vinifera |
transcript | Vv02s0025g02160.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAG CAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATGEST: gi|161713700|gb|FC062840.1|FC062840
genomic: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaacccca ... tattatacagCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATG
EST: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAG CAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATGEST: gi|71865014|gb|DT014069.1|DT014069
genomic: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaacccca ... tattatacagCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATG
EST: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAG CAACAATACCAAATGCATTTAGCTGAGATGGAEST: gi|71862173|gb|DT011228.1|DT011228
genomic: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaacccca ... tattatacagCAACAATACCAAATGCATTTAGCTGAGATGGA
EST: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAG CAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATGEST: gi|294965803|gb|GW837286.1|GW837286
genomic: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaacccca ... tattatacagCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATG
EST: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAG CAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATG
genomic: ACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaacccca ... tattatacagCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAAGAAGAAACCTGAGGTGACTGATGGTCCAATTCTAACTGAGCGTGACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGgtaaaccccagtaacatattgaccatactactagattatggtcacatttaagtgggatctttttcattatgttgttcaagacctagggactgtgttatattgttatcatttttattctcatttttcttattatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA