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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttcttgacctctaacctatcggttatgttttttattcttttttctattgatatagcaattgtcagtagaccctattctctagtaattcttgact...

Basic information

species Vitis vinifera
transcript Vv02s0025g02010.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188612|gb|CF607961.1|CF607961
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|349816270|gb|FQ399380.1|FQ399380
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTC-AGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|30298118|gb|CB974912.1|CB974912
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|161716840|gb|FC064955.1|FC064955
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|110718356|gb|EE095093.1|EE095093
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|110731735|gb|EE106407.1|EE106407
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|110707571|gb|EE084124.1|EE084124
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|110374493|gb|EC939283.1|EC939283
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGACAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|351044575|gb|FQ443106.1|FQ443106
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTC-AGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|351033177|gb|FQ461949.1|FQ461949
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
EST: gi|110410923|gb|EC976617.1|EC976617
EST:     ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA                         GGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG
genomic: ACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAAgtatagttct ... tgaatttcagGGGATATATATGAGCATGCTGTTGTCCTAAGTGTCAAGACAGAGGATCAGG