Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcatagctaactgcttccaaattgtttgtagttcagctcttattaagccaaaatgtaactagagttgtctatctgaatgtctctatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G02850.2 (Glycine max), 5'ss of exon 2
GAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcatagctaactgcttccaaattgtttgtagttcagctcttattaagccaaaatgtaactagagttgtctatctgaatgtctctatag----------
|| ||||| ||||| ||||| ||||||||||||| || | ||||| |||| ||| |||||||| |||||| |||||||| |||||||||| ||||||||||| || || | || | | || | || || | ||| | | || | | | | || | | || |||
CAAGAATGACCGGCGCCTTGACAATTGCTGGAGGTATTGCATTGTTGCAGGCAAGAGGGCCCTTGATGATGCCAACCTTGGAAAGCAAGTCCTTGACACTgtaagtcacag--aattttttgtagctgcattatgtagttgc-ctaactaatctagaaaattctattcttaggttcactaaccatatcagtagcgattgattt
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G10220.1 (Glycine max), 5'ss of exon 1
GAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcatagctaactgcttccaaattgtttgtagttcagctcttattaagccaaaatgtaactagagttgtctatctgaatgtctctatag----------
|| ||||| ||||| ||||| |||||||| |||| || | ||||| |||| ||| |||||||| |||||| |||||||| |||||||||| ||||||||||| || || | || | | || | || || | ||| | | || | | | | || | | || |||
CAAGAATGACCGGCGCCTTGACAATTGCTGGCGGTATTGCATTGTTGCAGGCAAGAGGGCCCTTGATGATGCCAACCTTGGAAAGCAAGTCCTTGACACTgtaagtcacag--aattttttgtagctgcattatgtagttgc-ctaactaatctagaaaattctattcttaggttcactaaccatatcagtagcgattgattt
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G36690.1 (Glycine max), 5'ss of exon 2
GAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcatagctaactgcttccaaat-tgtttgtagttcagctcttattaagccaaaatgtaactagagttgtcta-----tctgaatgtctctatag---
|| ||||| ||||| ||||| |||||||||||||| || | ||||| |||| ||| |||||||| |||||| ||||||| ||||||| || ||||||||| | || || | || | | ||||||||| || | | ||| | | | | | | || | ||| ||| | || |
CAAGAATGACCGGCGCCTTGACGATTGCTGGAGGTATTGCATTGTTGCAGGCAAGAGGGCCCTTGATGATGCCAACCTTGGACAGCAAGTCCTGGACACTgtaagtgacag--aattttttgaagctgcatttgtagttgcctaactaatgaagaaaattctgattgtatcaatttaattaatttgattgtatttaaattctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718198|gb|FC065668.1|FC065668EST: GCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACT ATGGACAGGTCGAGAATTGGTGTTCTAGTGGGATCAGGCATGGGAGGCTTA
genomic: GCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcata ... gtctctatagATGGACAGGTCGAGAATTGGTGTTCTAGTGGGATCAGGCATGGGAGGCTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTgtaagtcatagctaactgcttccaaattgtttgtagttcagctcttattaagccaaaatgtaactagagttgtctatctgaatgtctctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA