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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTTCCTGCAACGACTAGCACTGAGAGATTGGAGCTTCTAGATGACGAGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactgatatttatgcctttgtgattcttgcttgttgttttttattctgtttcctctcaaattctgtttctcgcttgaacgtaactttgcaacgag...

Basic information

species Vitis vinifera
transcript Vv02s0025g01340.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384123|gb|EC948539.1|EC948539
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110377836|gb|EC942930.1|EC942930
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|161706649|gb|FC055053.1|FC055053
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110685260|gb|EE063479.1|EE063479
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|30326889|gb|CD010151.1|CD010151
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110392500|gb|EC957964.1|EC957964
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|161711211|gb|FC060715.1|FC060715
EST:     TTCGGCATGAGGATTGTTGGCGGGGATC-CAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: TTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110404624|gb|EC969973.1|EC969973
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|32268747|gb|CD717906.1|CD717906
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|30133928|gb|CB919267.1|CB919267
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110400413|gb|EC966975.1|EC966975
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110398507|gb|EC964919.1|EC964919
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATCGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110698782|gb|EE076672.1|EE076672
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|30326243|gb|CD009505.1|CD009505
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110387130|gb|EC951775.1|EC951775
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
EST: gi|110414350|gb|EC980177.1|EC980177
EST:     AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAG                         AATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA
genomic: AGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactg ... aaatatgcagAATTACTCGTCCATTGTTACTGTCCATCCTGAGATTATAGATGGGAGACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGCTTCCTGCAACGACTAGCACTGAGAGATTGGAGCTTCTAGATGACGAGGAGCATATCTTCGGCATGAGGATTGTTGGCGGGGATCACAGGCTAAAGgtatgaactgatatttatgcctttgtgattcttgcttgttgttttttattctgtttcctctcaaattctgtttctcgcttgaacgtaactttgcaacgag

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacgtaa