Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGGATCAAGGTCGCGCGTTCCTCCAGCTGCGTCTGCAAACCTGGGATTTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaattaaatctgcctatgtgttttagattcttaggtattcttctgagagttgaattgttttgtcatttgttttgtatgctttttacacag

Basic information

species Vitis vinifera
transcript Vv02s0012g02790.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035676|gb|FQ463521.1|FQ463521
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351046180|gb|FQ442558.1|FQ442558
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|352794074|gb|FQ479316.1|FQ479316
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|26258680|gb|CA809743.1|CA809743
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351034454|gb|FQ463267.1|FQ463267
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351034375|gb|FQ463188.1|FQ463188
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351037902|gb|FQ465140.1|FQ465140
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|110364860|gb|EC928418.1|EC928418
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351052620|gb|FQ452532.1|FQ452532
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACNNNNNNNGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAAC-AAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAA
EST: gi|352790200|gb|FQ481399.1|FQ481399
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351055369|gb|FQ441967.1|FQ441967
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|37190420|gb|CF609769.1|CF609769
EST:     GTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: GTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351036160|gb|FQ464005.1|FQ464005
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351016089|gb|FQ432044.1|FQ432044
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|71884210|gb|DT033265.1|DT033265
EST:     ATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: ATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351027248|gb|FQ444497.1|FQ444497
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351044367|gb|FQ452919.1|FQ452919
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|71874794|gb|DT023849.1|DT023849
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351033642|gb|FQ462172.1|FQ462172
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351032807|gb|FQ461696.1|FQ461696
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|352798335|gb|FQ480360.1|FQ480360
EST:     TTAATGACAAATATGGTGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351033496|gb|FQ462147.1|FQ462147
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351039606|gb|FQ461473.1|FQ461473
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|352790134|gb|FQ481333.1|FQ481333
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|110724316|gb|EE100035.1|EE100035
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351056762|gb|FQ443389.1|FQ443389
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAGAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351025681|gb|FQ426695.1|FQ426695
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351054105|gb|FQ450187.1|FQ450187
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351047341|gb|FQ451853.1|FQ451853
EST:     TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
EST: gi|351044729|gb|FQ443260.1|FQ443260
EST:     TTAATGACAAATATGGTGCTACTGTAGATATTCCATTGGACACACTGAAT                         GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA
genomic: TTAATGACAAATATGATGCTACTGTAGATATTCCATTGGACACACTGAATgtaatgaaat ... ttttacacagGATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAA