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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGgtaagtcatttaatttcttaaactggaagtttgacttactatttcagtatttcttcttctgtcatattttgtgtattataggtctatatttttataaata...

Basic information

species Vitis vinifera
transcript Vv02s0012g02570.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G34300.1 (Glycine max), 5'ss of exon 3
GAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGgtaagtcatttaatttcttaaactggaagtttgacttactatttcagtatttcttcttctg--tcatattttgtgtattataggtctatatttttataaata
|| |||| | ||||||||||| | |||||| |||||||||||||| || |||||||| ||||| ||||| || |||| ||| ||| |||| || || | ||||||   ||    || || || |   |     |  ||  | |   || |  |  |   ||  |||   | ||   |  | |||       | ||    |  
GAATTTCACTGGGAAACTTAGCCTTGATGCTAGTAATGGAAACACCGAGGTTTACATGAATGGTCGAGAGATCACAAAACTTGAATTGAGGGTACTCAAGgtaagcttttatccttgtttaaatattatccatatgtaagactcgggtctgccaccagatggttcaagatatgaacaacacaggctgcagctgtttccca--

upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G01470.1 (Glycine max), 5'ss of exon 3
GAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGgtaagtcatttaatttcttaaactggaagtttgacttac-tatttcagtatttcttcttctgtcatattttgtgtattataggtctatatttttataaata-
|| |||| | ||||||||||| |  ||||| |||||||||||||| || |||||||| ||||| ||||| || |||| ||| ||| |||| || || | ||||||   ||    || || || |   |     ||   | ||| | ||  ||   | | |   || |||||    | |||| |   |      |  |  |  
GAATTTCACTGGGAAACTTAGCCTCGATGCTAGTAATGGAAACACCGAGGTTTACATGAATGGTCGAGAGATCACAAAACTTGAATTGAGGGTACTCAAGgtaagcttttatccttgtttaaatattatccatacaaccatatataagacttgggtgtgccaccagatttttc--aatatatgaacaacaggctgcagctgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376471|gb|EC941535.1|EC941535
EST:     TTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGG                         CTGGCAAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGAT
genomic: TTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGgtaagtcatt ... atgtgttcagCTGGCAAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGAT