Sequence
atgc intronic sequence ATGC exonic sequenceTTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtagctttttgcttcctgtctaacatcaatccattcggtgccaaggtgttcagttgcagatataaaaagaatggtctaagcctccatgtttgttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G41680.1 (Glycine max), 5'ss of exon 2
TTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtagctttttgcttcctgtctaacatcaatccattcggtgccaaggtgttcagttgcagatataaaaagaatggtctaagcctccatgtttgttgc---
||||| |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||| || ||| ||| | | ||||| ||||| ||||||||||| |||| | | | ||| | | | | | | | | | ||| ||| | | | | | || || || |||| |
ATGCCAAGCTAAGGAGCTTTTTGATCATCTGGAAAGTGTTCTTGCCAATGAGCCTGTTTCTGTTAAAAGTAGTCCAAACATTGTTGAAGTGAAACCTCAGgtcagtaaaaaaaaaaattccacttttagtcatttt-taggttacacatatttataattgaagaagtttatatttta-tatacatctt-atagttgtgacttg
upper sequence: Vv02s0012g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G25540.2 (Glycine max), 5'ss of exon 3
TTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtag--------ctttttgcttcctgtctaacatcaatccattcggtgccaaggtgttcagttgcagatataaaaagaatggtctaagcctccatgtttgttgc
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||||| |||||| ||| | | ||||| ||||| ||||||||||| |||| |||| ||| | |||| | | | || | || | | | | | | | | || | || | | |||
ATGCCAAGCTAAAGAGCTTTTTGATCATCTGGAAAGTGTTCTTGCCAATGAGCCTGTTTCTGTTAAGAGTAGTCCAAACATTGTGGAAGTAAAACCTCAGgtcagtaaaagaaaaactttccactttttatctatttttaggttagtca-tatttgcttgaagaagtttatactttatatgcatcttatagacatg---acttg----
upper sequence: Vv02s0012g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G17770.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtagctttttgcttcctgtctaacatcaatccattcggtgccaaggtgttcagttgcagatataaaaagaatggtctaagcctccatgtttgttgc--
||| || || || |||||| | || ||||| ||||| || ||| ||||||| ||||| |||||||||| ||| ||||| | || ||||||||||| ||||| || | | | | || || || | || | | | | | | | | |||| ||| | | | | | || |
TTGTCAAGCCAAAGAGCTTATGGAACACCTCGAAAGCGTGCTTACCAATGATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgttaaaagagttg-gtttattgtctgttttctcttttc--aagcatgaaagttccgatagctaaacttttttgtt-gttccgataaaaaaaacag
upper sequence: Vv02s0012g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S153_142V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtagctttttg--------cttcct-----gtctaacatcaatccattcggtgcca-aggtgttcagttgcagatataaaa-----agaatggtctaagcctccatgtttgttgc---------------------------------------
||| |||||||| ||| | | ||||||||| |||||||| || |||||||||||||| | || ||||||||| || ||||| ||||||| ||||||||| || | || | | || || || || ||| | || | | |||| | | | | || | | ||| | || |||
TTGGCAGGCTAAAGAGTTGCAAGATCACCTTGAAAGTGTACTAGCCAATGAGCCAGTCACGGTGAAGAGTGGTGCGCAAATTGTGGAAGTTACACCTCAGgtacttaacattacataagtagacatactcgaagatcgaatattggcttattggttgtgacatctgtttgcatacggttgataatttctcaatgaagcgtaaaatggacggattagtgcgttcgaagcattaatgaacgtgtatgttttgcattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110397120|gb|EC962841.1|EC962841EST: GTCAACATATTGTAGAAGTTAAGCCTCAG GGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTTTAACAATGCGGCAG
genomic: GTCAACATATTGTAGAAGTTAAACCTCAGgttagtagct ... aaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCCAGGCTAAGGAGCTTCTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGTCAACATATTGTAGAAGTTAAACCTCAGgttagtagctttttgcttcctgtctaacatcaatccattcggtgccaaggtgttcagttgcagatataaaaagaatggtctaagcctccatgtttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccat