1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCAAGCTTTTTGGAATCAAGGCGCATGGAGAAATCAGTTAGTAGGAATAGTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcattagccgtatggaatttaactatctattttttatttatagtgaatattttgttgcagatttaggattttatgggaatacaccagagtagcttt...
species | Vitis vinifera |
transcript | Vv02s0012g00530.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71863567|gb|DT012622.1|DT012622
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|351052954|gb|FQ453941.1|FQ453941
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|351033460|gb|FQ462111.1|FQ462111
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|161719281|gb|FC064821.1|FC064821
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71860602|gb|DT009657.1|DT009657
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71862323|gb|DT011378.1|DT011378
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71861933|gb|DT010988.1|DT010988
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|110376340|gb|EC941395.1|EC941395
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|294966332|gb|GW837583.1|GW837583
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|30253361|gb|CB970912.1|CB970912
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71864254|gb|DT013309.1|DT013309
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71863548|gb|DT012603.1|DT012603
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|110698297|gb|EE075660.1|EE075660
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|352789974|gb|FQ479584.1|FQ479584
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71862331|gb|DT011386.1|DT011386
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGCTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71862062|gb|DT011117.1|DT011117
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71862839|gb|DT011894.1|DT011894
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|351030850|gb|FQ438886.1|FQ438886
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71860796|gb|DT009851.1|DT009851
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|110719024|gb|EE096529.1|EE096529
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGEST: gi|71862732|gb|DT011787.1|DT011787
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
EST: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAG GAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
genomic: GTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcatta ... tgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAGCTTTTTGGAATCAAGGCGCATGGAGAAATCAGTTAGTAGGAATAGTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGgtattcattagccgtatggaatttaactatctattttttatttatagtgaatattttgttgcagatttaggattttatgggaatacaccagagtagcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaata