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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGgtaatccaattacaaattcaatttcatgtgcatttactattattatagtgtttttcaatcacgcattctttaaggagttcatggtgaaattggatgtttgtgacctag

Basic information

species Vitis vinifera
transcript Vv01s0244g00140.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G05380.1 (Glycine max), 5'ss of exon 1
GAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGgtaatccaattacaaattcaatttcatgtgcatt-tactattattatagtgtttttcaatcac----gcattct---ttaaggagttcatggtgaaattggatgtttgtgacctag-----------------------------------------
 |||||||||||||||||  | ||| ||||    ||||  || || |||||| | |||||||| ||||||||||||||||| |||||||  ||  | |||||| |    |    | ||   |  | | |   ||  | | || |     ||| ||    |  |    |||||      ||| ||||         | |   |      ||| || |                                         
AAGGATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCTATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTGTTGCTGgtattgttttcctcacttttttaacgtttttgttgcattcttttggggttgtgttgtggttgcggttgcattgcaggctaatgagtctgcaacagagtgcaactgagatgatctggtctgcaatttataagaaatgggataccttttgtcttgttag

upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G27500.1 (Glycine max), 5'ss of exon 1
GAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGgtaatccaattacaaattcaatttcatgtgcatttact--attattatagtgtt---tttcaatcacgcattcttta-aggagttcatgg--tgaaattggatgtttgtgacctag----------------------------------------------
 || ||||||||||||||  | ||| ||||    ||||  || || |||||  | |||||||| ||||||||||||||||| |||||||  ||| | |||||| |    ||   | ||   ||| || |   |||  |  |||  | | | |||   |||   |   |  | | ||  |||      |||  || || | | ||    |||  |                                                
AAGAATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCAATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTTTTGCTGgtattgtttttctcactt---tttaatatatttttgttacattcctttggggttgcgttttggttgtggttgcattgcaggtcaatgtggtctgcaactcggtgcaattgagatgatgtagtcttcaatttataggtaatgagatactttttgtcttgttag

upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S286_35V6.1 (Physcomitrella patens), 5'ss of exon 1
GAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGgtaatccaat--tacaaattcaatttcatgtgcatttactattattatagtgtttttcaatcacgcattctttaaggagttcatggtgaaattggatgtttgtgacctag
 || |||| ||| || ||  | ||| || |    || |  || || |  ||| |||||||||| ||||||||||||||||| || |||||| | ||   |||   |   |  | |    |   | | |||   | || |    |  |  | |   |    |     ||| |        ||||  |||   |     |   ||       
CAGAATGAAAGAAGTGGCACAACTTATTTTGAGTTTTCCGGAAGAGAAACCTATCATTGTTCTGTCTGCCATGGGAAAGACAACCAACAATTTGCTGAAGgtgtgcatgtgttgcggggt-gctattatgcagagtt-caggaagcaacgagcgatgtcgtagaaaattgtacgtctt-ttcaatgtgctgtctctcgcaagt-------