1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGAGGAAGAAGAAAGTGGTGAAAGAGGTCCCAAGTGGGTTTGTTCATGTGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagttgttatactacaaattaattaactttggaaaatgaccattcaaataaattcagcttttcatttacttttgctgggtgggtttcactttccag
species | Vitis vinifera |
transcript | Vv01s0244g00010.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTTEST: gi|110714473|gb|EE091418.1|EE091418
genomic: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTTEST: gi|32245670|gb|CD711489.1|CD711489
genomic: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: CAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGCTTTTGCAATCACTTGTTEST: gi|34416539|gb|CF415293.1|CF415293
genomic: CAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG GCAAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTTTGCAATCACTTGTTEST: gi|110695430|gb|EE073439.1|EE073439
genomic: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGCTTTTGCAATCACTTGTT
genomic: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGGAAGAAGAAAGTGGTGAAAGAGGTCCCAAGTGGGTTTGTTCATGTGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagttgttatactacaaattaattaactttggaaaatgaccattcaaataaattcagcttttcatttacttttgctgggtgggtttcactttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA