Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCATTCGGTAGAAACTATGTGCCTACATGGGCTTTTGACCACATCAAGTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaaccacattcaaatgccagcacatgtagtagtatcatgttttgttttttcatcataagcatagattttttttcccttttggatattcatatttggggtttgattttgggaag

Basic information

species Vitis vinifera
transcript Vv01s0150g00460.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008967|gb|BQ794001.1|BQ794001
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACCGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|110706358|gb|EE081812.1|EE081812
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACCGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71855708|gb|DT004763.1|DT004763
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71857132|gb|DT006187.1|DT006187
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|349830947|gb|FQ418231.1|FQ418231
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|110720672|gb|EE096797.1|EE096797
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACCGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|110689340|gb|EE065480.1|EE065480
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACCGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71857756|gb|DT006811.1|DT006811
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGTTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71858756|gb|DT007811.1|DT007811
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|161716374|gb|FC064899.1|FC064899
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71858567|gb|DT007622.1|DT007622
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71859446|gb|DT008501.1|DT008501
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|161717282|gb|FC069187.1|FC069187
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
EST: gi|71859081|gb|DT008136.1|DT008136
EST:     GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAG                         GTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC
genomic: GTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaacca ... ttttgggaagGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCCATTCGGTAGAAACTATGTGCCTACATGGGCTTTTGACCACATCAAGTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGgttagaaccacattcaaatgccagcacatgtagtagtatcatgttttgttttttcatcataagcatagattttttttcccttttggatattcatatttggggtttgattttgggaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC