Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacacataccttttttcttattctctttggttcttcccctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa...

Basic information

species Vitis vinifera
transcript Vv01s0150g00190.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G47790.3 (Glycine max), 5'ss of exon 2
GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacacataccttttttcttattctctttggttcttccc--ctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa--------------------------------------------------------------------
 | ||||||||| |||||||||||||| |||||||| |||||||| || || ||||| || || ||||||||||||||||| || ||||||||||| |||||||| |    |  ||||| | |   | |  ||     |       | || | |    ||  ||    |   |   | |  ||   ||  |   |    ||                                                                     
AGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcag

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G53700.1 (Glycine max), 5'ss of exon 2
-GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacacataccttttttcttattctctttggttcttcccctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa-------------------------------------------------------------------------------
  | ||||||||| |||||||||||||| |||||||| |||||||| || || ||||| || || ||||||||||||||||| || ||||||||||| |||||||| | |      |||| | || || ||||||| | ||   ||        || | | |   ||| | ||      |  |  ||   | |      |                                                                                
AAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataatat-----ttttcttttcttttctttgggtattgttctccgtgtgtagatattgctaataatgctgaaatcaaaaccaattgatgttttaaacacttattctgatttgtaacatcttgctttaataaattggatgttactactctaacctgctgtctgtatatgtgattgca

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattaca-cataccttttttcttattctctttggttcttcccctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa
|| ||| ||||| || ||||||||||| || ||| | || || || ||||| || ||  |||||||  ||||||| |||||||| ||||||||||| |||||||||  | |||  || |||   | ||   ||| | | || | ||||         | ||     || |||||    |  || | |              
GGAAGGTCAGAGTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttatcatctctctttgtgtgtttggttttgcttttgctctgtgtttgttcatttgtctt-tacttcttcactttttatacatttgcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823458|gb|FQ414868.1|FQ414868
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110699485|gb|EE076526.1|EE076526
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161716681|gb|FC067479.1|FC067479
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110719084|gb|EE096653.1|EE096653
EST:     TCCTTCCACTGATTGCAAGTGGTGCCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161715687|gb|FC068382.1|FC068382
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110697187|gb|EE073956.1|EE073956
EST:     CTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: CTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110719983|gb|EE095565.1|EE095565
EST:     TCCTTCCACTGATTGCAAGTGGTGCCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161715884|gb|FC065503.1|FC065503
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161710276|gb|FC058974.1|FC058974
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|351024148|gb|FQ423571.1|FQ423571
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGACCAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110357208|gb|EC920582.1|EC920582
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|77582243|gb|DV220085.1|DV220085
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|351033461|gb|FQ462112.1|FQ462112
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|294964050|gb|GW837853.1|GW837853
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|349824896|gb|FQ406475.1|FQ406475
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|294964024|gb|GW836899.1|GW836899
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCTGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110700295|gb|EE078171.1|EE078171
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|352772254|gb|FQ469779.1|FQ469779
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161711409|gb|FC060407.1|FC060407
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161716039|gb|FC067160.1|FC067160
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|71864767|gb|DT013822.1|DT013822
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161713242|gb|FC064009.1|FC064009
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110684980|gb|EE062879.1|EE062879
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110703972|gb|EE081374.1|EE081374
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAAGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAAGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161706016|gb|FC054922.1|FC054922
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGACGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAACGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161709715|gb|FC058446.1|FC058446
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|71860947|gb|DT010002.1|DT010002
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161718359|gb|FC066301.1|FC066301
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161712998|gb|FC062420.1|FC062420
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110404686|gb|EC970132.1|EC970132
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110733171|gb|EE109127.1|EE109127
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161715902|gb|FC069087.1|FC069087
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110710945|gb|EE087578.1|EE087578
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAAC--T-CAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110713755|gb|EE089953.1|EE089953
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161718437|gb|FC067294.1|FC067294
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|33409793|gb|CF215420.1|CF215420
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATGTTCCAGAAGGCGATATCATCTTCCAGTGCTTACTATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110686358|gb|EE063902.1|EE063902
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161716680|gb|FC067478.1|FC067478
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|71856507|gb|DT005562.1|DT005562
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110692523|gb|EE071865.1|EE071865
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110697979|gb|EE075469.1|EE075469
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACGGTGCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110700894|gb|EE077950.1|EE077950
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|30252911|gb|CB970462.1|CB970462
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110401690|gb|EC968306.1|EC968306
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110720839|gb|EE097110.1|EE097110
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110359115|gb|EC920067.1|EC920067
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110700272|gb|EE078124.1|EE078124
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161719721|gb|FC066678.1|FC066678
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161712571|gb|FC062173.1|FC062173
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161712714|gb|FC062286.1|FC062286
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110685495|gb|EE062275.1|EE062275
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161712846|gb|FC062021.1|FC062021
EST:     TCCTTCCACTTATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|71858179|gb|DT007234.1|DT007234
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161716632|gb|FC069139.1|FC069139
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|110709919|gb|EE085799.1|EE085799
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
EST: gi|161707465|gb|FC057367.1|FC057367
EST:     TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCG                         ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
genomic: TCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacac ... atggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattacacataccttttttcttattctctttggttcttcccctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaag