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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCATTACTGCACCTGAAACAAAGAGCCCGCTCTCCGATCCTTATCCTTTCAACTTAATGTTTCAAACATCAATAGGCCCTTCTGGCTTGATCCCTGGgtaaggatttaatttctattgcttcagttgtattcaatttagtataggcatgccaatttcttttgctcatctgatgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G29880.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGGCATTACTGCACCTGAAACAAAGAGCCCGCTCTCCGATCCTTATCCTTTCAACTTAATGTTTCAAACATCAATAGGCCCTTCTGGCTTGATCCCTGGgtaaggattta----atttctattgcttc--agttgtattcaatttagtataggcatgccaatttcttttgctcatctgatgcag
|||| || ||||| || || || ||||  || ||||| |||||||| || || || || |||||||||||||| || ||||| ||||| ||||| ||||||| || ||||      ||   ||   |||  ||     |||  |   |  |  |  |  ||| ||  |   ||  | || | |||
ATGGGATCACTGCTCCAGACACGAAGAATCCACTCTCTGATCCTTACCCGTTTAATTTGATGTTTCAAACATCCATTGGCCCATCTGGTTTGATTCCTGGgtgagtatttttcatgttataatcatttctgagccactttctttcctgagtttgt-tatcaaattactcctcttttgtgtttcag