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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACTGTAGATGAGAATAGAGAAGGTCATGCTGCCGCTTTTGGAGATGATATAGCCATTGAATGTCTTGCCACAGAGTTCAAGCGAGAGATATTTGTTgtaagaagacattggtcccttagttcgtttctattttccttggttctttccatatgcccagttgcttggaattctgactttttaatgcctgtttcttatg...

Basic information

species Vitis vinifera
transcript Vv01s0146g00020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0146g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G52090.1 (Glycine max), 5'ss of exon 1
-ATTGACTGTAGATGAGAATAGAGAAGGTCATGCTGCCGCTTTTGGAGATGATATAGCCATTGAATGTCTTGCCACAGAGTTCAAGCGAGAGATATTTGTTgtaagaagacattggtcccttag--ttcgtttctattttccttggttctttccatatgcccagttgcttggaattctgactttttaatgcctgt-ttcttatg
 |||  ||||||||||||||||||| |||| |||||| ||||| || |||||||| || |||||||| ||||| |||||||||||||||||||||| ||| ||||| |   |    ||||  ||  |||  |   |  ||   | | | ||    | ||      | |||  ||||  |  |||  ||        || |||  
TATTATCTGTAGATGAGAATAGAGAGGGTCGTGCTGCAGCTTTCGGTGATGATATTGCAATTGAATGCCTTGCTACAGAGTTCAAGCGAGAGATATATGTggtaagtaacaa--aatcccggagctttcagtggaaacttgagttgcttttggtgtttgtttgtattctttcaatttggtgtttaaaaaaaaaacattatta--

upper sequence: Vv01s0146g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G10730.1 (Glycine max), 5'ss of exon 2
ATTGACTGTAGATGAGAATAGAGAAGGTCATGCTGCCGCTTTTGGAGATGATATAGCCATTGAATGTCTTGCCACAGAGTTCAAGCGAGAGATATTTGTTgtaagaagacattggtcccttagttcgt-ttctattttccttggttctttccatatgcccagttgcttggaat-tctgactttttaatgcctgtttcttatg---
|||  ||||||||||||||||||| |||| |||||| ||||| || |||||||| || |||||||| ||||| |||||||||||| ||||||||| ||| ||||  |       | || | |||      |  | || | || | | |||   | |   |  |   ||   || | | || |  |  |   |   | || ||   
ATTATCTGTAGATGAGAATAGAGAGGGTCGTGCTGCAGCTTTCGGTGATGATATTGCAATTGAATGCCTTGCTACAGAGTTCAAGAGAGAGATATATGTGgtaatgaat-----gcccttcagtggacacttgagttgcttttggtgtttgtttgtattctttcaattaagatgtttcacctgctgttttttaaattttgtgcaa

upper sequence: Vv01s0146g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G13100.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGACTGTAGATGAGAATAGAGAAGGTCATGCTGCCGCTTTTGGAGATGATATAGCCATTGAATGTCTTGCCACAGAGTTCAAGCGAGAGATATTTGTTgtaagaagacat-tggtcccttagttcgtttctattttccttggttctttccatatgcccagttgcttggaattctgactttttaatgcctgtttcttatg
 ||  |||||||||||||  ||||||| | ||| || || ||||| ||||| ||||| || || ||||| ||||| |||||||| ||||| || | ||| || || ||  || || |     |  |  ||  || |||  |||  | |||   | | || | |  | |  || |     | |  ||||   || |  ||  
GTTATCTGTAGATGAGAACCGAGAAGGACGTGCAGCTGCGTTTGGGGATGACATAGCAATCGAGTGTCTAGCCACTGAGTTCAAACGAGAAATCTATGTGgtgagtagttatctgatgtaacaagt--ttgttactttggttgtgtttttt--tttcccaaatgacatctaagtaaagttgtgaaatgttggtgttatag-