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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTAAAGGGATTGGCTCAAAAAGGCTCTCCCCCATGGCGAGATGATGACAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTgtaattacacttgttcgcattgtagatgttttacatttatcaattatgcccactttgcatgaatgctgtatctgatctgtagttccatctttggttactt...

Basic information

species Vitis vinifera
transcript Vv01s0137g00580.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709438|gb|EE084898.1|EE084898
EST:     CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCT                         ATAAGATCCACAGAAAAATTGGTGAAG
genomic: CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTgtaattacac ... atacttgcagATAAGATCCACAGAAAAATTGGTGAAG
EST: gi|110732680|gb|EE108178.1|EE108178
EST:     CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCT                         ATAAGATCCACAGAAAAATTGGTGAAG
genomic: CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTgtaattacac ... atacttgcagATAAGATCCACAGAAAAATTGGTGAAG
EST: gi|161716341|gb|FC064657.1|FC064657
EST:     CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCT                         ATAAGATCCACAGAAAAATTGGTGAAG
genomic: CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTgtaattacac ... atacttgcagATAAGATCCACAGAAAAATTGGTGAAG
EST: gi|110712429|gb|EE090038.1|EE090038
EST:     CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCT                         ATAAGATCCACAGAAAAATTGGTGAAG
genomic: CAAAGACGGACATTTCATGTTTGCACTGGGAGAGAATTTAACCTCGCGCTgtaattacac ... atacttgcagATAAGATCCACAGAAAAATTGGTGAAG