Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366092|gb|EC929764.1|EC929764EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|110392611|gb|EC958153.1|EC958153EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|110695448|gb|EE073473.1|EE073473EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|351053923|gb|FQ441689.1|FQ441689EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|110384531|gb|EC948975.1|EC948975EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|110387938|gb|EC952646.1|EC952646EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST:
gi|110728565|gb|EE104246.1|EE104246EST: GCCTTANTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTANGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTAGGCCTCCTAAGGGCATTAAGACCGATTGGATTATGCATGAATATCGCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttcttatcacttttagaatcaaattttctactattttctttagagtatagattatatataatggtgatctgaccagtaactgctcgtgttttgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC