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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTTTCCAGCCAAAAGTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctcttataagaatttattttctcacttttccattgggtaatggttttattcaagcggttgtttgttaaattttgcttggatttgcttttttgcta...

Basic information

species Vitis vinifera
transcript Vv01s0026g01770.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127372|gb|CB912711.1|CB912711
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|30135554|gb|CB920892.1|CB920892
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110694509|gb|EE071677.1|EE071677
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|33410164|gb|CF215791.1|CF215791
EST:     ATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: ATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110716405|gb|EE091360.1|EE091360
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|30134615|gb|CB919953.1|CB919953
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110702201|gb|EE080645.1|EE080645
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110690858|gb|EE068296.1|EE068296
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|33407755|gb|CF213382.1|CF213382
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110376843|gb|EC941920.1|EC941920
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110378727|gb|EC943873.1|EC943873
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110410253|gb|EC975931.1|EC975931
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110403977|gb|EC969876.1|EC969876
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTT----                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110361346|gb|EC924813.1|EC924813
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|30298189|gb|CB974983.1|CB974983
EST:     TTTCTCTCTATCGCCGAAG-ATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110425573|gb|EC991961.1|EC991961
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|32270605|gb|CD719764.1|CD719764
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|34546972|gb|CF515204.1|CF515204
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|30128287|gb|CB913626.1|CB913626
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110413027|gb|EC978796.1|EC978796
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110715265|gb|EE093114.1|EE093114
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|34549851|gb|CF518083.1|CF518083
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|18459627|gb|BM437905.1|BM437905
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110704703|gb|EE081681.1|EE081681
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|33406237|gb|CF211864.1|CF211864
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|30126908|gb|CB912247.1|CB912247
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110387432|gb|EC952095.1|EC952095
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|161718495|gb|FC065351.1|FC065351
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110388513|gb|EC953271.1|EC953271
EST:     TTCTCTCTATCGCCGAAGAATCAATACCTACTTGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTCTCTCTATCGCC-AAGAATCAA-ACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110714714|gb|EE091939.1|EE091939
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110686187|gb|EE063562.1|EE063562
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110722871|gb|EE099533.1|EE099533
EST:     GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: GTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110391281|gb|EC956246.1|EC956246
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|33406145|gb|CF211772.1|CF211772
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|110697152|gb|EE073900.1|EE073900
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
EST: gi|34547060|gb|CF515292.1|CF515292
EST:     TTTCTCTCTATCGCCGAAGAATCATACCTACTCGCCGCGTTTCCTTGCAA                         GCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG
genomic: TTTCTCTCTATCGCC-AAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctctt ... tttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATTTTCCAGCCAAAAGTTTCTCTCTATCGCCAAGAATCAAACCTACTCGCCGCGTTTCCTTGCAAgtgagctcttataagaatttattttctcacttttccattgggtaatggttttattcaagcggttgtttgttaaattttgcttggatttgcttttttgcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa