1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATCGCCCTTATATATTACCACCCTTTCTCTCTGCTCTCAATTCTCTTCTTCTCCTCATCGCTCCCTCTGTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgagacattttctcttaattgctgtgatcttcctagattttatgaacaaatgcttttactgtttggttgctgagaaattgtatcggaaaataatg...
species | Vitis vinifera |
transcript | Vv01s0026g01640.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTCCATAGACTCTTAAG AATCATTACAATGGGACANNNNNNNNGTTGTATTCAAGTGGACCAGTCTAAEST: gi|110724693|gb|EE100742.1|EE100742
genomic: GGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
EST: TCCCTCTGTATCGGATCGGGGTTCCATAGACTCTTAAG AATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAAEST: gi|71859260|gb|DT008315.1|DT008315
genomic: TCCCTCTGTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
EST: TCTCCTCCTCGCTCCCTCTGTAGCGGATCGGGGTTCCATAGACTCTTAAG AATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAAEST: gi|110382334|gb|EC939189.1|EC939189
genomic: TCTCCTCATCGCTCCCTCTGTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
EST: CTGTAGCGGATCGGGGTTCCATAGACTCTTAAG AATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAAEST: gi|110687599|gb|EE065191.1|EE065191
genomic: CTGTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
EST: GTATCGGATCGGGGTTCCATAGACTCTTAAG AATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAAEST: gi|161715489|gb|FC069052.1|FC069052
genomic: GTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
EST: CGGATCGGGGTTCCATAGACTCTTAAG AATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
genomic: CGGATCGGGGTTCCATAGACTCTTAAGgtaattgaga ... taccttgtagAATCATTACAATGGGACAAGCTTTTTGTTGTATTCAAGTGGACCAGTCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCGCCCTTATATATTACCACCCTTTCTCTCTGCTCTCAATTCTCTTCTTCTCCTCATCGCTCCCTCTGTATCGGATCGGGGTTCCATAGACTCTTAAGgtaattgagacattttctcttaattgctgtgatcttcctagattttatgaacaaatgcttttactgtttggttgctgagaaattgtatcggaaaataatg
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa