1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACAGCGATCTGCACACAGGAGATGGCTCAGTTGACATTCATGGGAAGCCTGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatcttacttctttattttcttttcatttatctgaaaatctatactgcttctaacagttgtaacataaagtgcag
species | Vitis vinifera |
transcript | Vv01s0011g06620.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCTCTTCATTCTTG GTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTGEST: gi|352785794|gb|FQ475797.1|FQ475797
genomic: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatc ... taaagtgcagGTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
EST: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTG GTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTGEST: gi|352769291|gb|FQ471440.1|FQ471440
genomic: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatc ... taaagtgcagGTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
EST: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTG GTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTGEST: gi|352780890|gb|FQ466203.1|FQ466203
genomic: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatc ... taaagtgcagGTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
EST: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTG GTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTGEST: gi|352773196|gb|FQ470811.1|FQ470811
genomic: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatc ... taaagtgcagGTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
EST: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTG GTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
genomic: TGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatc ... taaagtgcagGTACTGAATGTTGTGAACGTTTAGCATACTATGGGATTGCAACTAATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGCGATCTGCACACAGGAGATGGCTCAGTTGACATTCATGGGAAGCCTGTTCTGAGGAGCAACACTGGAAACTGGAGAGCATGTCCCTTCATTCTTGgtaatctatcttacttctttattttcttttcatttatctgaaaatctatactgcttctaacagttgtaacataaagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA