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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGgtgaactcttggttctgtgatattcaattgtttggaattttatttattgggatgttaacatatggttgatgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g06190.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G27540.1 (Glycine max), 5'ss of exon 2
GAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGgtgaact----cttggttctgtgatattcaattgtttg---gaattttatttattgggatgttaacatatggttgatgcag------
| | ||| || |||| | | || |||| ||||||||||| ||||||||  | || |||||||| || ||  |||| || ||||||||||||||||| |||||  | |    |   |        ||||| |||   ||     || || || | |      | || || | |    ||||       
GGAAAGAAAGTCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTCGCGCAAGAAACTGTCTCATATCTTGAGTCTCTTGATATGATGTCTGGGGAGgtagattacaacactgccgaacattattctatttactgcttatatattgttaaattttcactcaaaattttgcctttgcatgttcag

upper sequence: Vv01s0011g06190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G01830.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGgtga-----------------actcttggttctgtgatat---tcaattgtttggaattttatttattgggatgttaacatatggttgatgcag
 |   ||||| |||| ||| || | || |||||||| ||||| ||||| ||||| || | ||| || ||| |||| ||||| ||||||||||| |||||||| |                 |||  ||||| |||  | |   | || | |  |   |     |  |  | || ||  | |||  ||  |||||
TAGAGGAGAGCCTTCACCGGTTAGGGATGAGTATGCTCCTGTTATATTCTCTCAAGATAGTGTCTCTTACCTTGAGTCACTCGATATGATGTCAGGCGAGgtaatataaacattatcagacacttatggttttgttttttcggttaagtatccgacctgcacctcttctgaattttggc-tatcttttctgcag