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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGgttggacctttgtttaaaattgtgccattatcgtatttcttttggttctatattctcaatgaccaataatattgtctttattttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
GACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGgttggacctttgtttaaaattgtg-ccattatcgtatttc----ttttggttctatattctcaatgaccaataatattgtctttattttgcag
|| ||||| ||||| || ||||| ||||||||| | || || ||||||||||| |||||||| |||||||||||||| | ||| |||||| | ||  |||||| |    | |||| | |   ||  |  | |||    ||    |||| ||| || ||  |     | || | |     ||| | |||| |||
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgtttt-cag

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 1
GACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGgttgg-acctttgtttaaaattgtgccattatcgtatttcttttg--gttctatattctcaatgaccaataatattgtctttattt--tgcag
|| ||||||||||| || ||||| || |||||||| || || ||||| || || |||||| | |||||||||||||| | ||| || |  ||||| |||||   |  |||| | || | |   |    ||  | | | ||  ||   | | |  |  ||||||       || | | | ||||||   | |||
GATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACTACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTCATACACACAGgcgagtgccttggcttgagaaattcgtgtttccttttgtccattactgcttttcaaactcaatctgatggaaaact-tttttattcgatacag

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S80_71V6.2 (Physcomitrella patens), 5'ss of exon 2
GACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGgttgg-acctttgtttaaaattgtgccattatcgtatttcttttggttctatattctcaatgaccaataatattgtctttattttgcag------------------
|||||||||||||| || || || ||||||||| | || || |||||||||||||| || || |||||||| ||  | || || || ||||| ||||||||| ||  ||   ||||  |   |||  ||||     || | || |||| | || |  |  ||  || || |  | |       ||   |                  
GACCTTCACCAAGTGATCAAAGCCAATGATGATTTGACCCCTGAGCATTATCAATTCTTTTTGTACCAGCTACTGAGGGCCCTCAAGTATATCCATACAGgtaggtgccaaagtttgga---gtggaattac----ttccattcggttatgtactaactttgtgcagtatttctattcccgggttttcgttgggtttcgttggctat