1 5' 3' | 2 5' 3' | 3 5' 3' |
GTATGTGACCAAAATACTGGTGAGATTTGCTTACATACACTCCAACGCATCGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatcttattccgcttttcaatctgaattactccaagcatgagatcattttattactttcaagaagtaacacaacttatacaaccagtttgttagt...
species | Vitis vinifera |
transcript | Vv01s0011g04740.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGGCCCTTGNAAGT-CATAAAEST: gi|30127864|gb|CB913203.1|CB913203
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTG-AAGTTCATCAA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAEST: gi|30328426|gb|CD011688.1|CD011688
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAAEST: gi|30126378|gb|CB911717.1|CB911717
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAA
EST: CGTATCCGTTCGATGCATCCGCAGAGGCTGGGTACCTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGGCGATGATGAGACCCTTGAAGATCATCAAEST: gi|27579025|gb|CB001720.1|CB001720
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATG-CGATGATGAGACCCTTGAAGTTCATCAA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAAEST: gi|110702347|gb|EE080959.1|EE080959
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGGCCCTTGAAGTTCATAAAAEST: gi|34549305|gb|CF517537.1|CF517537
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACCTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAAEST: gi|110710246|gb|EE086413.1|EE086413
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAA
EST: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCAC ATTTTGGATCATGAAGACAATGCGATGATGAGGCCCTTGAAGTTCATAAAA
genomic: CGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatct ... aaaaatgcagATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTGACCAAAATACTGGTGAGATTTGCTTACATACACTCCAACGCATCGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACgtaagtatcttattccgcttttcaatctgaattactccaagcatgagatcattttattactttcaagaagtaacacaacttatacaaccagtttgttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagtaa