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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGCAACAAAGACAAACAAGAGTTGGTGTCAAGGGAGAAAAAGGACAGGCGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGgtaacttcaacttcaatagagtagctgttcttatcattggatttgcacttagttaccatattgatttcaagttgtcattatctttggcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 3
TACGCAACAAAGACAAACAAGAGTTGGTGTCAAGGGAGAAAAAGGACAGGCGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGgtaacttcaacttcaatagagtagctgttcttatcattggatttgcacttagttaccatattgatttcaagttgtcattatctttggcag
|  |  ||||    || ||||||||||| || |||||||||||||| ||||||||||| || | ||||||  || | |||||||||||||| |||||||||| | ||    ||| ||    ||  | |  || | |   |   ||    | |||    | |   |||  |||    |             
TGAGGGACAAGAGTAAGCAAGAGTTGGTCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGACCGAATAGCAGTTCTAGCAAGCAGAATGGGGTTGTATAGgtgattt----ttctattctttatttatcttttttac--ggcctgagtgttgttgt--tttcacttttgagtgactag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30321827|gb|CD005089.1|CD005089
EST:     CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAG                         CCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA
genomic: CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGgtaacttcaa ... tctttggcagCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA
EST: gi|30321623|gb|CD004885.1|CD004885
EST:     CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAG                         CCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA
genomic: CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGgtaacttcaa ... tctttggcagCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA
EST: gi|27581202|gb|CB003897.1|CB003897
EST:     CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAG                         CCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA
genomic: CGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGgtaacttcaa ... tctttggcagCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTA