1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGAGAAGCAATGAGAGAGAAAACAATAAACCAAGAGAAGTTATCCATGTGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattcaaaattcaaaattcttcatcaattatttgcaaaacaaaaacaaaatataatcatttcctcatttcctcaaaactttatttccatgattatgaaaatctaaacaacttatccattaattgtctatgtatgttcttgttctgtactag
species | Vitis vinifera |
transcript | Vv01s0011g03720.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGG GTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTTEST: gi|33402267|gb|CF207894.1|CF207894
genomic: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattca ... tctgtactagGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTT
EST: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGG GTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTTEST: gi|33405074|gb|CF210701.1|CF210701
genomic: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattca ... tctgtactagGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTT
EST: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGG GTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTTEST: gi|33405155|gb|CF210782.1|CF210782
genomic: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattca ... tctgtactagGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTT
EST: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGG GTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTT
genomic: TGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattca ... tctgtactagGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGAAGCAATGAGAGAGAAAACAATAAACCAAGAGAAGTTATCCATGTGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGgtaaaattcaaaattcaaaattcttcatcaattatttgcaaaacaaaaacaaaatataatcatttcctcatttcctcaaaactttatttccatgattatgaaaatctaaacaacttatccattaattgtctatgtatgttcttgttctgtactag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT