1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatgctaccgctgaaactgttttgtgcttttttctcttgaaatgctctgtttgggttgctgaaataacgtgggaaaagaaaagaagagaaatca...
species | Vitis vinifera |
transcript | Vv01s0011g03620.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71870300|gb|DT019355.1|DT019355
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71863380|gb|DT012435.1|DT012435
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71863974|gb|DT013029.1|DT013029
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71866817|gb|DT015872.1|DT015872
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71861822|gb|DT010877.1|DT010877
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71861840|gb|DT010895.1|DT010895
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|161707839|gb|FC055239.1|FC055239
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTGEST: gi|71863921|gb|DT012976.1|DT012976
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
EST: ATCGCTCCTACTGGGATCAGAACTGAGGAG TGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
genomic: ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatg ... agtcttgcagTGGTATGAAAAGAATTCAAGGGGCTTGGAAATTTTCAGCAAATGCTGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCTCCTACTGGGATCAGAACTGAGGAGgtaagcaatgctaccgctgaaactgttttgtgcttttttctcttgaaatgctctgtttgggttgctgaaataacgtgggaaaagaaaagaagagaaatca
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaa