1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGATGGGAAGACTTTTACATATAACAGCAGTATAAACATTGCGGTAGCAGTGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgacatgcattttctgtggaaattcgtgaaaaaattcttgtatcctgtcaagttatgaatgatgttttgatttttaatttcgaaattagtttagttaataatttgtttttgatggtgtag
species | Vitis vinifera |
transcript | Vv01s0011g03380.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCAATCAATGGTGGGTTGATAACCCCTGTATC-TCAGGATGCTGATAAG TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTEST: gi|110399056|gb|EC965543.1|EC965543
genomic: GGCAATCAATGGTGGGTTGATAACCCCTGT-TCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTEST: gi|26259444|gb|CA810507.1|CA810507
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTEST: gi|77583069|gb|DV220571.1|DV220571
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGGGAAGACTTTTACATATAACAGCAGTATAAACATTGCGGTAGCAGTGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgacatgcattttctgtggaaattcgtgaaaaaattcttgtatcctgtcaagttatgaatgatgttttgatttttaatttcgaaattagtttagttaataatttgtttttgatggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT