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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g03110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G34780.1 (Glycine max), 5'ss of exon 2
------TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaag--gaataatggtt-tatgttttggtttatttcaactaaattttggaaaatttgttgttgtag
            |  | |  | |||||| |||    |  || |||||| || |||||||||||||||||||||||||| |      ||||||| || |   | ||||||   | || || |   |   |  || ||||  ||| |          |  |  |   |  ||||| |   |||||| |    |   ||||  |  || | ||| |      |||  || |    | |||||||||  |        
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCCGACTGGCTTAGATCTGTTCAGTTGTGGAATC------CAGATCCCCCAGCTGAGGAGgtaagaaaatcaaaagcttaattgtcaatttgtcattgttttaataagtttttgttttgtgctttttgttgaagagatgagttgaattgaattgtttttgtgtgtctcaaaaaattctaatttc-ctgtggaaaattgttcag-----

upper sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G32770.2 (Glycine max), 5'ss of exon 2
------TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtag
            |  | |  | |||||| |||    |  || |||||| || |||||||||||||||||||||||||| |      ||||||| || |   | ||||||   | || || |   |   |  || ||||  ||| |      |   | |   |   |  ||| |   ||| |     ||    || | | | ||| || ||||                                       
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATC------CAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgt-----ttgagtgagtttttgtgctttgtcaatcaaaagcttaatt--gagtga-gttttgtgctttgtg-------------------------------------

upper sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G32770.1 (Glycine max), 5'ss of exon 2
------TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAA-CCAGA--CCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaa-aatttctaacattttga---aattttagctcctctctaatcctacattt-----------tttttttctcagagatcaaacaaggaat--aatggtttatgttttggtttatttcaactaaatttt-----ggaaaatttgttgttgtag
            |  | |  | |||||| |||    |  || |||||| || |||||||||||||||||||||||||| |||||  |||||| |      || |   |   |    | | |     ||||| | |   |||||   | |||| |  | |    ||||  |   ||           |||| | ||  | | | ||   | || |  ||| |  | |||||  || | | | || |  |||||     ||||||||  |        
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgtttgagtgagtttttgtgctttgtcaatcaaaagcttaattgagtgagttttgtgctttgtgttgaagagatgagttgaattgact-tgtttatgtgtgtctaaattctattttcccgtggaaaattgttcag-----

upper sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G10940.1 (Glycine max), 5'ss of exon 2
---TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtag
   |  | ||||| |||  || |    ||    |   |||||||| |||||||| ||||| |||||||||||||| |  |  |||   || ||   ||||||||||    |   |    | ||| |   |||||  ||    | |     | || |      |||| |||||    ||||  ||  ||   ||    |||| ||||||  ||||                                  
ACATTCTCATAAACACACAAAAACCACCACTGATAAAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCA---CCTCCTACCAAAGAGgtaaaaccccaattttattttattttattttataaaaaaaacagagatttatttt---gttttgttttttaaggagaaaaattaaaagat----gtttttgtttttatttag---------------------------------

upper sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G68670.1 (Arabidopsis thaliana), 5'ss of exon 2
TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtag
|||  || ||          |      |  |   |||||||| ||||||||||||||||||||| | ||||| ||  | || |||| |      |||||||||   | |      |  ||| |||      | | |||||| |      ||     | ||  |  | |  |     ||  ||  |                                                            
TGAACATGAATCTTCTCCAGAACTTGTGAATAATAAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaagttttgagctttttaaa-----ggagttttagttttcgattatgaggaaataatcatgtgtt----aattgaattatag---------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712473|gb|FC061778.1|FC061778
EST:     TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG                         GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
EST: gi|161720667|gb|FC070611.1|FC070611
EST:     TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG                         GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
EST: gi|161719475|gb|FC067685.1|FC067685
EST:     TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG                         GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC